Dpon002980.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- stc
- Assembly
- GCA_000355655.1
- Location
- NW:22276-25693[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.7 9.3e+03 -4.0 1.6 15 19 277 281 276 281 0.81 2 12 1.4e-06 0.0047 16.2 13.4 2 19 324 340 323 340 0.92 3 12 4.8e-10 1.6e-06 27.2 10.9 1 18 376 393 376 394 0.98 4 12 1.6 5.4e+03 -3.2 1.1 6 10 424 428 423 428 0.86 5 12 8.2e-08 0.00028 20.1 14.1 1 19 434 452 434 452 0.98 6 12 5.9e-06 0.02 14.1 14.8 4 19 499 514 492 514 0.89 7 12 1.8 6.2e+03 -3.4 2.0 5 10 543 548 543 548 0.93 8 12 0.0017 5.7 6.3 9.7 1 11 554 564 554 565 0.96 9 12 2.3e-07 0.00079 18.6 8.9 1 18 581 598 581 599 0.91 10 12 0.0026 9.1 5.7 15.1 1 18 638 654 638 655 0.89 11 12 5.4e-08 0.00018 20.7 16.6 1 19 691 710 691 713 0.97 12 12 0.00032 1.1 8.6 13.1 1 18 720 738 720 739 0.90
Sequence Information
- Coding Sequence
- ATGTCCCAGTTGGACCCGACTGAACCAGTGGGGGCTAATTCAGCTGGTTACTTTCAAAGAGGCCGCTTTTCCAGCGACGGGAGACATTTAAGCAGAGGggcaataaagaaaaagtccAACAGATACAACCAGGCACTTCCAGGCTCCGCAAAGCAACTCAAGCCCGAAATAAATGACTCTTCCGCCCAACTGAATGCAACTGCACCGGAGTTCGTCCCTTCGGGCAGCGCTACGAAAAGGGACTTTCAGGAGAGATCCTGGAGAGATCGCAGCAAGTCGCGAAACTGGCGCAACTCGGATATGCAGTCTATGGGTGATAGGGCGAGACATTCCGGAAGCAATTCCTTTAACCCAGAACCCAATGAGTATAGGGAATATAACAACTGGAATGGCAGGGAAAACAGTGCAGAGTTCGGCAACAATCCATCCTCGTATAGATACGACAGGCCAGGGCCGAGTGCCACGGggtttcaaagcaaaaaaacccCAACCAATTATAGAACTGGCTACGTTAACAACGGCTACCATCGGCCTAATAGGTTCCAGGGAAGTTTTAGCAACAATCACAGCGCAGATGGTGgctttgaaaaaagaaaatttccagaCAGGAAAAACAGTGGGAAATCCAGTAAACTATATCCAACCACAGCTGGGCAAAGAGAGCGACTAACTGAGATGATCGTTAACAACCTGCTCGAGTGCCTGGTTTGCTGTGAGAAAATCAAGAGATCAGACGGAGTCTGGTCCTGTTCCCAGTGCTACCACATTATTCACTTGACCTGCACGGTTGCATGGGCCAAGTCTTCAAAGGTTGAGGAAAACTGGCGCTGTCCAGCTTGCCAAAACTCGTACGCCGAAGTGCCGCACCAATACACTTGCTACTGTGGAAAATGCGTCCAACCAAGGGCAAACCCCACTGTGCTGGACCACGGTTGCGGGAGTATGTGCTTGAGAATAGGCAAAAGCTGCGCACACAAGTGCAATATTGTATGCCATCCAGGTCCGTGTCCTGAATGCAGTATCATGGTGTCGAAGTCTTGTGGATGCGGTGCTACTCAGCAGATGGTCAAATGCTGCAGCAATTTGAAGATTATTTGCGACGCCACATGCAACAAGCTTCTGAACTGTGGATTGCATAGATGCGAGGCAACGTGCCACGCTGGGGCTTGCCAGCCTTGCGCTGAGATGATTGTCCAAGAGTGTTACTGCGGGGTAACTGGCCGGAAGGTGGCGTGTGATGAAGCGCATGTTGGGCAGACAAGGTTCAGTTGCCAGAATACTTGTGGCAAGTTGTTGCCTTGCGGCAATCATTACTGCCCGGCTAGTTGCCATTCTGGGCCTTGCGGCCTCTGTCCCACCGATGTGGATCTCATCAAGTTCTGCCACTGTGGGAAGACTGAGCTGCAGACTGCGAGGCTCTCCTGCTTGGACTCTATACCTTGCTGTGCAAACATCTGCGGGAAAAGGTTCATTTGCGGCCCTCCTAGCAAGCCGCACACTTGCGTGGAAAAGTGCCATGAAGGAGAATGCGCGCCTTGTCCCTTAACAACTGTGCTGAAGTGCCGATGCGGACATATGGACAAAGAAGTGGCCTGCCAGAAGCTAACAACCAAGGCAGACGACGCGAGGTGCGAGAAGAAATGCACGAAAAAGCGCCTATGTGGCAAGCACACTTGCAAGCAAAAGTGCTGCATCGAGTTCGAGCACATTTGCCGCCTGCCTTGCAACAAGCTGCTGACTTGCGTGCTGCACAAGTGTGAACTCACATGCCATTCTGGCCGATGTCCGGCCTGCATGGAAACCAGCTTCGATGAGCTTTACTGCGAATGCGGGGCCAGCGTTCTCTTTCCGCCAATTCGATGCGGAACCAAACTTCCAGCCTGCAAGAAGCAATGCTCCAAACCGCGTGCTTGCGGCCACGATCCGAACCACGAATGCCATCCAGGGCCCTGCCCACCATGCTTCGTTCTCACCAAGCAATGGTGTTACGGACACCATGAGCAGCGTGCAGTCATTCCCTGTCACCAAAGCAGCTTCGGCTGCGGTTTGCCATGCGGTAAGCAGATGCCTTGTGGCCGACACAGATGCACCAAGGCATGCCATGAAGGCGATTGTCCTTTGCCATGCTCGCAACCGTGTTCAGCGCCAAGGACGCTGTGTGGACACCCATGCAGCAAGCCGTGCCACGACTCACCGTGCCCGGAAAGTAACTGCTGGCAAATGGTTCCAGTGACTTGCTTGTGCGGCCTGCAAAAAGCCAGCAAGAGCTGCATGGAGTTAACTGAAGAGTTCCGCCGAATTGAAATGGCTCAGCTGAAGGACAGGCTGAGCCACATGATGAGCAACGCCAGCGTGGACTTGCAGGAGGCATCAGTGAGGAGACCCGCCATTCTAAAAGTGTTGGAATGCAATGAAGAGTGCAGAGTATTGGATCGGAATCGGCGTCTAGCTATTGGGCTGCAGATCCTAAACCCCGACCTCAGCCAGAAGCTCACACCCAGATATTCGGACTTTCTGCGCCAAAGAGGGAAGAAGGACGGGCACTTCTGCCAGAAGGTCCACGATAAGTTTACCGAGCTGGTTCAGTTGGCAAAGCAGAGCAAGCAAAAGAGCCGCTCGTATTCCTTTGAGTCGATGAATCGGGACAAGCGGAAGTTTATCCACGAATACTGCGAGCACTTTGGGGTTGAAAGCGCTGCTTACGACGCCGAACCCAACAGGAACGTGGTAGCCACTGCGGTTAAGGACAAATCGTGGCTGCCCAGCTTGAGCTTGCTGGAATCGGTGCGAAGAGAAAACGGGCACAGGAAGATTCCCCTTCCGACACTAGGCCACAGTCATAATCCTGAAAACGAAATTGTGTCCTTGAAACTACTCACTAGCACTAAAAAGGACTAA
- Protein Sequence
- MSQLDPTEPVGANSAGYFQRGRFSSDGRHLSRGAIKKKSNRYNQALPGSAKQLKPEINDSSAQLNATAPEFVPSGSATKRDFQERSWRDRSKSRNWRNSDMQSMGDRARHSGSNSFNPEPNEYREYNNWNGRENSAEFGNNPSSYRYDRPGPSATGFQSKKTPTNYRTGYVNNGYHRPNRFQGSFSNNHSADGGFEKRKFPDRKNSGKSSKLYPTTAGQRERLTEMIVNNLLECLVCCEKIKRSDGVWSCSQCYHIIHLTCTVAWAKSSKVEENWRCPACQNSYAEVPHQYTCYCGKCVQPRANPTVLDHGCGSMCLRIGKSCAHKCNIVCHPGPCPECSIMVSKSCGCGATQQMVKCCSNLKIICDATCNKLLNCGLHRCEATCHAGACQPCAEMIVQECYCGVTGRKVACDEAHVGQTRFSCQNTCGKLLPCGNHYCPASCHSGPCGLCPTDVDLIKFCHCGKTELQTARLSCLDSIPCCANICGKRFICGPPSKPHTCVEKCHEGECAPCPLTTVLKCRCGHMDKEVACQKLTTKADDARCEKKCTKKRLCGKHTCKQKCCIEFEHICRLPCNKLLTCVLHKCELTCHSGRCPACMETSFDELYCECGASVLFPPIRCGTKLPACKKQCSKPRACGHDPNHECHPGPCPPCFVLTKQWCYGHHEQRAVIPCHQSSFGCGLPCGKQMPCGRHRCTKACHEGDCPLPCSQPCSAPRTLCGHPCSKPCHDSPCPESNCWQMVPVTCLCGLQKASKSCMELTEEFRRIEMAQLKDRLSHMMSNASVDLQEASVRRPAILKVLECNEECRVLDRNRRLAIGLQILNPDLSQKLTPRYSDFLRQRGKKDGHFCQKVHDKFTELVQLAKQSKQKSRSYSFESMNRDKRKFIHEYCEHFGVESAAYDAEPNRNVVATAVKDKSWLPSLSLLESVRRENGHRKIPLPTLGHSHNPENEIVSLKLLTSTKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00431820;
- 90% Identity
- iTF_00431820;
- 80% Identity
- iTF_00431820;