Dpon006695.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- -
- Assembly
- GCA_000355655.1
- Location
- NW:14386-17428[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00096 0.05 13.3 1.3 1 23 208 230 208 230 0.97 2 11 5.7e-05 0.003 17.2 1.8 1 23 239 261 239 261 0.98 3 11 0.00011 0.0057 16.3 8.8 1 23 270 293 270 293 0.98 4 11 0.0091 0.47 10.3 0.4 2 23 301 322 300 322 0.97 5 11 0.025 1.3 8.9 2.1 1 23 327 350 327 350 0.96 6 11 0.014 0.73 9.7 1.2 1 23 357 380 357 380 0.95 7 11 2 1.1e+02 2.9 3.3 1 23 388 411 388 411 0.91 8 11 4.4e-06 0.00023 20.7 1.1 1 23 420 443 420 443 0.96 9 11 0.0093 0.48 10.2 6.9 1 23 452 475 452 475 0.97 10 11 0.0027 0.14 11.9 1.3 2 23 481 502 480 502 0.96 11 11 0.036 1.9 8.4 0.1 2 23 513 535 512 535 0.96
Sequence Information
- Coding Sequence
- ATGTCCACAATGTGCGATGGGGCCGCTTTAATGAGCGACGAAGACGAAACCCTGGTCCTAAACTATCTGGATGATGACCTGGATAAGCCAGAATCACCCTCAGACCTTGTggatgaaaatcaaaacacCAGCCTTAATCTTGAGGATGTGGTCAATGGTTTAAAGCCTAGAAGACGGGGGAGGCCGAAAGGCTCCAAAAACAAGGCCAAAGGCCTCAGGGCCAGCAAGACCCGCCAAAGTAACGGACCGAAAGCCTCAGCACCAGCAAAAGATCCTGTAAATGGCACCAATGGACAGAGCAACCCAAATAACATCGTTGatatagaatttaaaattgaaaactttgatgATGCTCTTGATGGCTTGGTGGATCGCAGCAGCGGCTTTGgtgcaaatttcgaaaacattgTTAAGCGTGAACCAGAGGAGGAAGCGCAGGTTGATTTAAAGTATGAGAGTATGAGTGATGCAGCAGAGGCGATGAATAAGAAGAAGCTGGTGAAGAAAAGCCCTAAGACTAGCCCAAAGAACCATAAAGCTTCCAATGGCCAGAGCAGCCTTGATAGCTTCTTGAAGGTTGTTGATTTGAAGCCCCAAAGCAAATTGGGTTTAAGCAACGTGTTTAAGTGCAACCATTGTCTCTACGTGGGGAACAGCAAGGCAAACTTGGAGCGCCACAACTTAATACACATGGATCCCAATGATATTCTCTGGTACAAGTGCAGTGACTGCGACTACAAGTCTAAGTACGAGAGCCAGCTGAAGAGCCACACTCTCATCCATAAAAACCCCGAAGAAATCGAGTACTTCCAATGCCCGCACTGCGAACTGAAGTGTAGCAGGAAGCACAACTTGAGCCACCACATTCGGAGCATCCACGCTGATAGAGTGAACAACCTCAAATGTGCAGAGTGCAGTTATTCAACCTTTTCCAAAGATCGCCTAGTGGCTCACGTGAAAATGCATTCGAAGGAAGTGTTTATGTGCACGCTGTGCAAATTCGTCACCAAACGAATCGAGTATCTGGAAAGCCACTTCAAGATGAAGCACACCAATGTGGAAAAACCCTTTCCTTGCGACACTTGTTCTTATAAGGGCAAAACCAAGCGAGAGCTGGACCGGCACTATGACCGAATGCACAACAAAGACACTTTAAAAACATACCAATGCAGCCAGTGCAGCTTCAATTCAATCTACAAGAAAAACTTGGAGTTTCACCTGCTTCACATGCACCAAAACTCCGAAGGCTTCCAAAAGTTCATCTGCGGCCATTGCGATAAGACTTTCGCCTATAAAAACGGCCTGAAGACGCACATCATTCGAATCCACCTCAAACTAACGGACGAGGACTGGCACAAGTGCTTAGAGTGCAAGTACAAGTGCAAGGATGTCAACACCTTGAAGAGGCACATTAAGAGGAACCATGGGGCCCCCAGGTTGAATTGTCAAAAATGCAGCTTTGCCACCAACAGGAAAAAGTCTATGGTGGCCCACATGAACACTCATGACATTACAACGGCTGGCAGTCCCGTTCTTAAGTGCCCCGATTGCCCCTATCGCATAATCCTCACCGTGTCGTTTCTCTACCACATGAAGACCGTGCATGGGAAGTCAGTCGGGACCAAAGATCTCCCCAAGTACCATCTGATAGAAGACtga
- Protein Sequence
- MSTMCDGAALMSDEDETLVLNYLDDDLDKPESPSDLVDENQNTSLNLEDVVNGLKPRRRGRPKGSKNKAKGLRASKTRQSNGPKASAPAKDPVNGTNGQSNPNNIVDIEFKIENFDDALDGLVDRSSGFGANFENIVKREPEEEAQVDLKYESMSDAAEAMNKKKLVKKSPKTSPKNHKASNGQSSLDSFLKVVDLKPQSKLGLSNVFKCNHCLYVGNSKANLERHNLIHMDPNDILWYKCSDCDYKSKYESQLKSHTLIHKNPEEIEYFQCPHCELKCSRKHNLSHHIRSIHADRVNNLKCAECSYSTFSKDRLVAHVKMHSKEVFMCTLCKFVTKRIEYLESHFKMKHTNVEKPFPCDTCSYKGKTKRELDRHYDRMHNKDTLKTYQCSQCSFNSIYKKNLEFHLLHMHQNSEGFQKFICGHCDKTFAYKNGLKTHIIRIHLKLTDEDWHKCLECKYKCKDVNTLKRHIKRNHGAPRLNCQKCSFATNRKKSMVAHMNTHDITTAGSPVLKCPDCPYRIILTVSFLYHMKTVHGKSVGTKDLPKYHLIED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00431713;
- 90% Identity
- iTF_00431713;
- 80% Identity
- iTF_00431713;