Dpon001190.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- -
- Assembly
- GCA_000355655.1
- Location
- NW:2514147-2537127[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00031 0.016 14.9 2.7 2 23 95 117 94 118 0.95 2 11 0.013 0.66 9.8 4.3 3 23 208 229 207 229 0.91 3 11 0.0032 0.17 11.7 4.7 2 23 398 420 398 420 0.95 4 11 0.22 12 5.9 0.4 2 23 471 493 470 493 0.80 5 11 0.0009 0.047 13.4 2.0 2 23 562 584 561 584 0.96 6 11 0.00087 0.045 13.5 0.0 3 23 609 630 608 630 0.94 7 11 0.006 0.31 10.8 3.6 2 23 680 702 679 702 0.96 8 11 0.063 3.3 7.6 3.7 2 23 716 738 715 738 0.92 9 11 0.00011 0.0059 16.2 0.9 2 23 791 813 791 813 0.95 10 11 0.0024 0.13 12.1 0.4 1 23 885 907 885 907 0.99 11 11 0.0018 0.094 12.5 1.2 2 23 916 937 915 938 0.94
Sequence Information
- Coding Sequence
- ATGACATCCGTCACAATACCCTCAGGCACTGGTCCACCACATGGAGGTTATACTTCAGCACGCGACCAAATATCAAACAGCGAATCAGAATTCGAATCAACCAGAAGTTCCAAGCGTTGCCGTAGTTTACCATCAACCACAGATTCTTGCAAAAAACGTAGAAAACAATCTACTCCGATCAGGATCTACAATTCAGAATCGGAAAGTGCAGGAGATAGTTCTGTTCATTTATCACCATATTTGGATTCAAAACCAGCAGAGTCTCCTGAGAATATCGATTTACGATGTCACATGTGCCAATTAGAATTTGAAACATCTGAACAGTTGCAAAACCACATTTCTCGTGGACATCACTATGTTGGATGCAAAACAGAGTCAGAGGAGCAAGAAGATGATGCAAGATCTACTACTCCTGCATTTACGGATGTTCCTCTGTGTCTTTCAATGCACAGACCCGAAATACAATGGACAGGAGATATGCATAGCAAAGACTGGGGAAATCACAATATGCAAAACATGTCATTTAGTACTAATAATCCGGTGTTTATGACAATGCCCCAATTCCATCAACCAGAAAACGTTCAAATTAAACCTATTCGAATATTTAATGTTGATGCGTATTGCGGTTTATGCAACAAGgagttttgtaataaatattttttaaaaacccacAAAGCTAATAAGCATGGTATTTACACCGACTTAATAGCAACTGAACACCAACTGCCAACTACTGTGAATATGACATCTACTACATCCACCATGAATTTGAAACTATCGACGTCCGTGCCAAGTCTAGATGTATCCTTAAAAAACGAATCGAAAACTTCGATTAATGCTCTAAACCCGTATGGCGTAGTATTTCCTTGTTCCTTCTCAAATAAGCTCTCGAAACAGTCAGGAGTCTTAACAGAAAACGAGCTAAACGATGTTCAGAATCCAATTTCCGTTTCGACATCTAATGGTCCATCATCTTCGAGTGAAAGTGATAAATTAATATCTGAAGATCAGGGTACCGATGTATGTGCTAGTCCTGGTACTACCCAAGCCGAACCTACCTCAACCAAAAACGAATCTGATGGAactgctgttttattttatgattctGCCAAAATGTCTCCTAGTCAGTCTAATCGAGAAATGGATATTTCGAGTAGGCTTCGCAGAATAGGCGTTATGAATCCCAAAGCTTATTgtgaaatatgtaataaagagtactgcaataaatattttttacgcaCGCATAAAATGAAACGTCATGGAATATTTATTAGTGATGAAAAAGACCAAAAGATGGAAGGATTGAGCAACAATTCGTGGCCTTCTACCATTCAGACAAGCCCATTAAATCTTATTGTAACTGAACAAGCATTTGCGAATGACCGAAAAACTACATCTCCTAACGACATAAGTTGCGAAATATGCGGTATTAAGTTCCAAAATACCAGCTTAGCCCATTTACATAACTATACCGTACATTCCAAAACCACACCCAAAGATTTTGAGAGTAATTTGGATATGGGTTTTGGACCGGTAGCTGCTGATTCAAGAAAACTTCTGGAGAAATGCAGGATTACAACTTCTGATAAATCCAGAAATCCTGACGCTATAAGTGAGGATCTACAGAAATTGCAGTCGATGATCCTTCAGTTAAATGACCTAGACGTGACAAAAGTTTCGACAACATGTAGTTCATGTaataaagaatttgaaaatcgattcTATTTACATGCGCATATGGTCACCGAACACGGCCTCCTTTTGGAAGATAACAcggatttagaaaaaagtcaTGACTCTGAAAACAGTAGCAACGCCAATATATGTGATTTATGTGGAAAAGATTTTCAGAATTCCGCGGAAATGAAGGCACATATTCTGGAGGTACATTCAAACTTGACTTCGGTTCCAGACAACAATAAGGAAGAGTATGGGAATGAAAATATATCGCCAGATAAACCACCGAGTAAAATCTTTGTGTCTGGTGTTTCCGCTCCAGAACGCAGACTATCAGTCAATGTCACACCTACTAGCAGTTATtgtgaaatttgcaacaaagaATTgtgcaacaaatattttatgaagacCCATATGCAAAGAATGCATGGTATTGAAATCGAAAATGGGGCTCAAATAGGAGGTGTAGTTTGTGATATCTGCAATAAAGAATTGTGCAGTAAATATTTCCTTCGAGTACACAAACATAATACGCATGGAATTGTGGAATATGGTGCCAGCCTTTTGCAGCCTAGGAAGCCCGAAGAACAACCTCCATTGCAACCCCGTCTTTCAACACCAGAGCCAGAGCCTTCTCTAAAGCCAAGCGATCTTGCTGATTTAAGTCAGAGGTACTTTACCCACTTTACAGAAGTATGTCCGATGTGCAGCAGAAGATTCCGAAGCACCAAATGGCTAAAGTCTCACATGTTAAATGACCACGGACAGGCAGGTGCTGATAAGTGGCTAGAGTTAGAGCAGCAAGTCCAACAGTCGCTTGGTCAAAACAGCAAGCCTTCCAAGGCCATAAAAATCGAACGCGCAAgtccaaatttaaaagtaacaaatgGAAATCAGGATCTAAATAGCAAATCGATCGGAATTCAAAATGTACTTACAACAATTTTCGGTTCAGATGAGGCAAACTCAAAATCCTATCAATGTTCCTATTGCCCATACACTTCTACATTACtacctttattatttatccATGAACGAACTCACactataaatgaaaatattcctcTAAAGTGCCCAGTATGTCCTCAATCCTTTTTAGAAAGAGATTTGTTTCAACGGCACATGTATAGTCATCATCCGTTTCTGCCCCCTTTATTTAATGGGCACACTGATATAAATAATGATCAGCCAGGTCAACAAAAATTAGAAGAATTGGAATCTCTGCATATTAAAATGGAGGAAAACTCCGAACAGAGCAAACCATCGCTTTCAGAAGCTGCAACGAAAAACAAATCCAGAATCAGCGTAGCCGAATTACCTATGGAATTAAGTCAGTCCTTACAAGATGTTGCCAGGAAAGCTCAGTTACCAGCCACTTATGCGTTGCCACAACCCCACGCCGAAACATCACAAGAGGAGGTTTCTGCCGAAGCACCGGGGTATGTAATGCAAGCTTTTTTACTAGAAGACTCTGCTGCAGATCGCAGAGTGGTACCAGCTGTCGTTTTTTTACCGATGCTTCAAAAGCAACCCTCTCCTTTAACAGTTACTTTTACCCTCACCCCGGCCTAA
- Protein Sequence
- MTSVTIPSGTGPPHGGYTSARDQISNSESEFESTRSSKRCRSLPSTTDSCKKRRKQSTPIRIYNSESESAGDSSVHLSPYLDSKPAESPENIDLRCHMCQLEFETSEQLQNHISRGHHYVGCKTESEEQEDDARSTTPAFTDVPLCLSMHRPEIQWTGDMHSKDWGNHNMQNMSFSTNNPVFMTMPQFHQPENVQIKPIRIFNVDAYCGLCNKEFCNKYFLKTHKANKHGIYTDLIATEHQLPTTVNMTSTTSTMNLKLSTSVPSLDVSLKNESKTSINALNPYGVVFPCSFSNKLSKQSGVLTENELNDVQNPISVSTSNGPSSSSESDKLISEDQGTDVCASPGTTQAEPTSTKNESDGTAVLFYDSAKMSPSQSNREMDISSRLRRIGVMNPKAYCEICNKEYCNKYFLRTHKMKRHGIFISDEKDQKMEGLSNNSWPSTIQTSPLNLIVTEQAFANDRKTTSPNDISCEICGIKFQNTSLAHLHNYTVHSKTTPKDFESNLDMGFGPVAADSRKLLEKCRITTSDKSRNPDAISEDLQKLQSMILQLNDLDVTKVSTTCSSCNKEFENRFYLHAHMVTEHGLLLEDNTDLEKSHDSENSSNANICDLCGKDFQNSAEMKAHILEVHSNLTSVPDNNKEEYGNENISPDKPPSKIFVSGVSAPERRLSVNVTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCDICNKELCSKYFLRVHKHNTHGIVEYGASLLQPRKPEEQPPLQPRLSTPEPEPSLKPSDLADLSQRYFTHFTEVCPMCSRRFRSTKWLKSHMLNDHGQAGADKWLELEQQVQQSLGQNSKPSKAIKIERASPNLKVTNGNQDLNSKSIGIQNVLTTIFGSDEANSKSYQCSYCPYTSTLLPLLFIHERTHTINENIPLKCPVCPQSFLERDLFQRHMYSHHPFLPPLFNGHTDINNDQPGQQKLEELESLHIKMEENSEQSKPSLSEAATKNKSRISVAELPMELSQSLQDVARKAQLPATYALPQPHAETSQEEVSAEAPGYVMQAFLLEDSAADRRVVPAVVFLPMLQKQPSPLTVTFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -