Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: -
Assembly: GCA_000355655.1
Location: NW:9029-10893[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.1 4.7e+02 0.8 0.3 1 17 48 64 48 65 0.82

2 8 0.00011 0.0056 16.3 4.7 1 23 159 182 159 182 0.98

3 8 0.0006 0.031 14.0 0.0 2 23 187 207 187 207 0.96

4 8 1.1e-05 0.00059 19.4 0.8 2 23 213 234 212 234 0.95

5 8 0.00014 0.0072 16.0 3.0 1 23 239 261 239 261 0.98

6 8 0.24 13 5.8 2.5 3 23 271 288 270 288 0.87

7 8 3.7e-06 0.00019 20.9 1.8 1 23 294 316 294 316 0.98

8 8 2.5e-05 0.0013 18.3 1.2 1 23 322 345 322 345 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.1	4.7e+02	0.8	0.3	1	17	48	64	48	65	0.82
2	8	0.00011	0.0056	16.3	4.7	1	23	159	182	159	182	0.98
3	8	0.0006	0.031	14.0	0.0	2	23	187	207	187	207	0.96
4	8	1.1e-05	0.00059	19.4	0.8	2	23	213	234	212	234	0.95
5	8	0.00014	0.0072	16.0	3.0	1	23	239	261	239	261	0.98
6	8	0.24	13	5.8	2.5	3	23	271	288	270	288	0.87
7	8	3.7e-06	0.00019	20.9	1.8	1	23	294	316	294	316	0.98
8	8	2.5e-05	0.0013	18.3	1.2	1	23	322	345	322	345	0.97

Sequence Information

Coding Sequence: ATGAACTTAGAAAACGTATGTCGAACCTGCTTACGGGTGCCCCAAAACCCGAAAATGCTATTTGAAGACAAAACCGAACTGGTGAAGAAGATCGAAGCACTCTCTGCTGTAGTGATTGAAGAGACTGAAGAGCTGCCGAAGCACATCTGCGAAGAATGCgttcaaaatataaacaactaCTACAATTTCCGAAAGGTCATCATTAACACCGACTTGGATCTGCGAACTAGACTAAACACTTTAAAGGCCACTAAGTACACGTTCAAACCGCGAAGTAAAATGAAACATTGCGAGATCGTAACCGATTTTTTCGAAGATTCAGTGGATATTAAGCCAGAGGAAGACATGGAATTTGCAGAAGacgatataaaaattgtagacCATGACTTGGAAAAGAGCATAGATGCAAATGACTCAGAATATATGCCAAAACAGGACTTAGACATGTTAAAGGACTTGGCCACGAAAAGGATCTTCAAATGTCGACAATGTAAGAAGATATTTGACTCGAAATTTAAACTATACAATCATCGAAGAACCGAACATCAGACTCCAGGTGTTTGCAATATTTGCGGCGCTGTAGTTAGAGCGGACAATTTGAGCAAACACATCAAGCTTCACTCGGAAACTCCTGTAACATGCAAAGAATGTGGAAAAACAGTTAAGAACTCGGAATCATTAAGATCGCACAAGTTATTACATTCAGAGAACTCTTTCACTTGCGAGATTTGCGggcgaaattttaaattaaaaggcGAACACACACGGCATTTAAGGAGACACGGTGATCCAGATTTTCGGAAAGTGGCTTGCTTGCTGTGTGGCAAGAAAGTTCACGAATTGAAGAAGCACATGTTGACGCACACCGGCCAGAGACCGTACAGTtgtgaaaactgccaaaaagGATTCACCAGTCGATATGCGCTGAAAATCCACAAGAGACAGCACACCAATGAGCGGCCCTACATTTGCAATCACTGTGGCAATGGATTTCCTCAGAAAGTATCTCTGTTAACACACTTAAAGTCCAAGCATTGCATTGTAATTTAA
Protein Sequence: MNLENVCRTCLRVPQNPKMLFEDKTELVKKIEALSAVVIEETEELPKHICEECVQNINNYYNFRKVIINTDLDLRTRLNTLKATKYTFKPRSKMKHCEIVTDFFEDSVDIKPEEDMEFAEDDIKIVDHDLEKSIDANDSEYMPKQDLDMLKDLATKRIFKCRQCKKIFDSKFKLYNHRRTEHQTPGVCNICGAVVRADNLSKHIKLHSETPVTCKECGKTVKNSESLRSHKLLHSENSFTCEICGRNFKLKGEHTRHLRRHGDPDFRKVACLLCGKKVHELKKHMLTHTGQRPYSCENCQKGFTSRYALKIHKRQHTNERPYICNHCGNGFPQKVSLLTHLKSKHCIVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -