Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: -
Assembly: GCA_000355655.1
Location: NW:978902-984292[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0011 0.056 13.2 2.0 1 23 94 116 94 116 0.97

2 15 0.00014 0.0075 15.9 1.3 1 23 126 148 126 148 0.98

3 15 0.0071 0.37 10.6 4.3 1 23 153 175 153 175 0.98

4 15 9.9e-05 0.0051 16.4 0.4 1 23 184 206 184 206 0.98

5 15 0.036 1.9 8.4 3.2 1 23 215 238 215 238 0.97

6 15 6e-05 0.0031 17.1 1.4 1 23 246 268 246 268 0.99

7 15 0.0005 0.026 14.2 1.0 1 23 277 299 277 299 0.99

8 15 0.35 18 5.3 2.3 1 23 333 356 333 356 0.92

9 15 0.042 2.2 8.2 0.4 3 23 367 388 366 388 0.93

10 15 0.0021 0.11 12.3 5.8 1 23 395 418 395 418 0.97

11 15 0.00043 0.022 14.4 0.2 2 23 425 446 424 446 0.97

12 15 0.00054 0.028 14.1 1.7 1 23 455 477 455 477 0.99

13 15 0.035 1.8 8.4 0.3 1 21 483 503 483 504 0.94

14 15 0.2 10 6.0 2.7 2 23 516 538 515 538 0.94

15 15 0.52 27 4.7 5.5 3 23 550 570 547 570 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0011	0.056	13.2	2.0	1	23	94	116	94	116	0.97
2	15	0.00014	0.0075	15.9	1.3	1	23	126	148	126	148	0.98
3	15	0.0071	0.37	10.6	4.3	1	23	153	175	153	175	0.98
4	15	9.9e-05	0.0051	16.4	0.4	1	23	184	206	184	206	0.98
5	15	0.036	1.9	8.4	3.2	1	23	215	238	215	238	0.97
6	15	6e-05	0.0031	17.1	1.4	1	23	246	268	246	268	0.99
7	15	0.0005	0.026	14.2	1.0	1	23	277	299	277	299	0.99
8	15	0.35	18	5.3	2.3	1	23	333	356	333	356	0.92
9	15	0.042	2.2	8.2	0.4	3	23	367	388	366	388	0.93
10	15	0.0021	0.11	12.3	5.8	1	23	395	418	395	418	0.97
11	15	0.00043	0.022	14.4	0.2	2	23	425	446	424	446	0.97
12	15	0.00054	0.028	14.1	1.7	1	23	455	477	455	477	0.99
13	15	0.035	1.8	8.4	0.3	1	21	483	503	483	504	0.94
14	15	0.2	10	6.0	2.7	2	23	516	538	515	538	0.94
15	15	0.52	27	4.7	5.5	3	23	550	570	547	570	0.96

Sequence Information

Coding Sequence: atgaaTGTTATTAAACAAGAGCCAAGTAGCCTGGAAGAGTTGTGGATTCAAAATAATCTGGGGGTCTCTCTCTCCCATTGTGATCAAAATATTCTAGTCTCCCAAGAGCATGGaaactttgattttaaaaatgaatcccAAGCTCAGATTGCGGAATGCAATGGATTTGTTGAACATACCGAATGTAAAATCGAAGTCCTGGAGCACTctttattaagtaattttcagGGggaTCTTTCAGCTCCGAACTTTCAAAGAACTTTCAGGGAGCGAAAGTATTTTTCATGTGCATTCTGTAGTTACAGGACCAAGttcaaatacaatttaattagaCATGTTAATATTCATGGACCTGTGCCTAGTCAAGTTGCACAGTTTAAATGTACCCAGTGTCCATTTGAAAGCGACAAAAATTCTTCTTTGCAAAGGCATTTAAAAGTACATTCGGgtatattttacaaatgtGCACATTGTGACTTTGAGACCAAACACAAGGAAAACCTGCCGAAACATTTGTTGAGGCACAAAGATCCCAGTGAGTGCAGAATGTATGACTGTGATGAATGTGAATATGAGACTAAAGATAAACTGGGCCTTAAAAGGCATATGTTAACCCACAGGAGATTAGAAGAAGTAGAACATTTTAAGTGTGGATTGTGCAATTTTATGACAAAGCATCAACTTTCATACAACAATCATTTGCTCAAGATTCATAACAAGGATAAAATCGAGAAATTCCAATGTCCCGAATGCGACTTTGGTACCTATCATAAAATTTCTCTTAAAAATCACATACTAACCCATAGAAAGCCAGGCGAAGTTCCTATGTACAAATGTCCAGAATGTCCAtatgaaacgaaaaataaacagtttttaccCAATCACATGAAAAGACATCAGGGTACAATGCCATGCCCCAAGTGCCAGAAGCAAATCTGTCGCAGAGGCATGACTTTGCACTTGAAAACGCATGAATCCaaagaagcaaagaaaaaATATCAATGTGAACATTGTGATTACGGGACTCTCTACTTTGGAAATATGAGTCGACATAAGAAAATAATGCATTCGAACAAGGCTGAAATTGACTATAAGCTGTGCCCAGAGTGTCCATTTAAGACTTTTGAAAATGCTAGGTTGAAAAGACACATAAAAGAAATGCACTGCGACGATGCTCCTCAATTTAATTGTGATCACTGCGATTTTACATCCAAGTTTAGATCTTGCCTCAAACGGCACATTGATACTGCTCATATCAACACGGATCCTGTTACTTGTCCAGTTTGCCAGAAACAGTCGGCCAATGTTTACAccttaagGATTCATATGAAACTGCACAAACCAGaaggtgaaataaaaatgtttcaatgtgCGGAGTGTCCGTATAAAACACGGCACAGTGGCGCGTATAAAGACCATGTAAGAAAGCATGAAACGCCAACTAAATATGACTGTAAAAACTGCCCGTTTAAGTCAGACGATAAATCCTTGTGGAACAAtcatatttcaagaaaaacggACGTCAATATCCCAGAAAATACAATTAGCTGTAAGCTTTGTTGTTACCGAACGCGGCAGAACGACAATTTACAACTTCATGTAATTAGGAAGCATGAACGAGACAGGAGGCGGAAGAAATGTTCGCATTGTACTTTGTGTGATTTTAAATCTTcgaatAGGAAGTTATTTGCAAATCACCTGAAGGGCCATAAGACTAAATATCCAAGTAAGCTGGAGGAAGAAGCATTTTATGCTTTTGAGGATGCGGACAGTTTGGAGGAAACCTCTTCCTCAAGCAAGGGAGATGTCTGA
Protein Sequence: MNVIKQEPSSLEELWIQNNLGVSLSHCDQNILVSQEHGNFDFKNESQAQIAECNGFVEHTECKIEVLEHSLLSNFQGDLSAPNFQRTFRERKYFSCAFCSYRTKFKYNLIRHVNIHGPVPSQVAQFKCTQCPFESDKNSSLQRHLKVHSGIFYKCAHCDFETKHKENLPKHLLRHKDPSECRMYDCDECEYETKDKLGLKRHMLTHRRLEEVEHFKCGLCNFMTKHQLSYNNHLLKIHNKDKIEKFQCPECDFGTYHKISLKNHILTHRKPGEVPMYKCPECPYETKNKQFLPNHMKRHQGTMPCPKCQKQICRRGMTLHLKTHESKEAKKKYQCEHCDYGTLYFGNMSRHKKIMHSNKAEIDYKLCPECPFKTFENARLKRHIKEMHCDDAPQFNCDHCDFTSKFRSCLKRHIDTAHINTDPVTCPVCQKQSANVYTLRIHMKLHKPEGEIKMFQCAECPYKTRHSGAYKDHVRKHETPTKYDCKNCPFKSDDKSLWNNHISRKTDVNIPENTISCKLCCYRTRQNDNLQLHVIRKHERDRRRKKCSHCTLCDFKSSNRKLFANHLKGHKTKYPSKLEEEAFYAFEDADSLEETSSSSKGDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -