Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: -
Assembly: GCA_000355655.1
Location: NW:734695-739567[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3e-07 1.6e-05 24.4 0.2 1 23 231 253 231 253 0.97

2 10 0.086 4.4 7.2 2.3 1 23 257 279 257 279 0.97

3 10 0.57 30 4.6 0.4 1 23 285 307 285 307 0.91

4 10 0.66 34 4.4 1.7 3 19 315 331 313 335 0.90

5 10 0.0082 0.42 10.4 2.7 1 23 341 364 341 364 0.95

6 10 0.00012 0.0064 16.1 1.2 1 23 374 396 374 396 0.98

7 10 9.4e-05 0.0049 16.5 1.0 2 23 402 423 402 423 0.97

8 10 2.7e-05 0.0014 18.2 0.4 1 23 429 451 429 451 0.97

9 10 2.3e-07 1.2e-05 24.7 0.4 1 23 457 479 457 479 0.98

10 10 0.0018 0.095 12.5 0.1 3 21 487 505 485 506 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3e-07	1.6e-05	24.4	0.2	1	23	231	253	231	253	0.97
2	10	0.086	4.4	7.2	2.3	1	23	257	279	257	279	0.97
3	10	0.57	30	4.6	0.4	1	23	285	307	285	307	0.91
4	10	0.66	34	4.4	1.7	3	19	315	331	313	335	0.90
5	10	0.0082	0.42	10.4	2.7	1	23	341	364	341	364	0.95
6	10	0.00012	0.0064	16.1	1.2	1	23	374	396	374	396	0.98
7	10	9.4e-05	0.0049	16.5	1.0	2	23	402	423	402	423	0.97
8	10	2.7e-05	0.0014	18.2	0.4	1	23	429	451	429	451	0.97
9	10	2.3e-07	1.2e-05	24.7	0.4	1	23	457	479	457	479	0.98
10	10	0.0018	0.095	12.5	0.1	3	21	487	505	485	506	0.94

Sequence Information

Coding Sequence: atggaCGAGTCAATgacCTGCCCTATGGCCTTTTTTACACCAATTGTAGAGATTGCCGAAGAACCAACAACTAATTCAACCAaagaaaaatcctcaaaatccAAATTGCGGAAAGGAGGTTCTAGTGAACTTAAAATAGGAGAATCGTGCGCCAAACCAAATACCCGTTCCAGAAAAACGGCCAGTGAACCGCAGTTAGTGTCCGCTATTGCAGATAATGTGAAGAATCAAGGCGACATTAACAAGGAACAGGAACTTGAGAAACCTGCAACCGATAGTCAGGAAACCAAAGAAATTGAGCAAACAGATGAACCAAAAAATGAGACCAAAAAACAGGAGTTCAGGGGTAGTAAACGGAAACGTGGCAGACCaaagaaaatagttttagaGCCTAAGAAATCGAAAAGAAAGTATACGAAGAAATCTAGTCCTGTCGTAGAAGAAccaaagaaagaaaagaaacCTCGCAAGCAGAGATCGCCAAAGAAAAAACCGCCTGATAGCGAAGTAATGGCTTTCAAGTTTGATGATGATGTTTTCATATCTCCTGAGCACTTGGACGTTAGCAAAGTTATTAAATGCCCAATTTGCAAAGATGAAAAAGAGTGGAACGCTAAAGACATCAAAGAACATTACAAGCTGCTGCATCCTGGAAAACGATTGAGAACTTCAAGATTTTTCGGCGATGTGCATCCTTGTGATGTATGTGGTAAAGAGTTCAAGTCTCCGGGCAGTCTTAAGGATCACATAGAAACCCATAACAGCTATTACTATTGTGATATATGCAATCATTCCACCAAAAAGATCGTCGATCATATCGTCCATATGAGAGTCCACAACATCAACAGTAACTTCCAATGTCTGATGTGCGATTTCAGAACCAAAGATATCAACGAAATCACCGAACATGCCACCAACCACGAAGATCTGCTGAAGTACTGGTGCGCTTCCTGTAAGAAATCCTTCAGCATTTTGCAGCATTTCCAAGAGCACGACAATTATCACACTGGGCTCAAACCGTTCGACTGTTTGTATTGTGACAAGTCCTTTCTCTACTCCAGATATCTTCATGCTCATAAAATAACCATGCATAAAGACCTGATGAGCTGTCCGAGCAGTTATGTGTGTGTCATCTGCGCCAAGGTGTATCAACATAGGAATAGTTTGAAACTACATATGAACTCCCATACCGGAAATTTTGCTGTTTGTGATATATGCGGAAAAACGCTGTCAAGCAAGGAGAAACTGAAGTTTCATTTGAGAACACACACTGGATATAAGCCTTATAGttgCCAATACTGTGGAAAatcatttacaaaaaaaccaaTACTGGTGGAGCATGTGCGAGTGCACACTGGCGAGAAACCCTACATTTGCGACTATTGTTCCAAAGGCTTTTCGCAAAGAAGTAGCTTAGTGATCCACATGAGGGGTCACACTGGTGAAAAGCCTTACGGATGCCAGTTTTGTGGAAAAGCCTTTGTGGCTAAGGCCATGCTCAATATTCACCTAAAGAGTTGCAGAGGCCTGTTTCAAGTCGTTACAAAAATGGAGTTTTAA
Protein Sequence: MDESMTCPMAFFTPIVEIAEEPTTNSTKEKSSKSKLRKGGSSELKIGESCAKPNTRSRKTASEPQLVSAIADNVKNQGDINKEQELEKPATDSQETKEIEQTDEPKNETKKQEFRGSKRKRGRPKKIVLEPKKSKRKYTKKSSPVVEEPKKEKKPRKQRSPKKKPPDSEVMAFKFDDDVFISPEHLDVSKVIKCPICKDEKEWNAKDIKEHYKLLHPGKRLRTSRFFGDVHPCDVCGKEFKSPGSLKDHIETHNSYYYCDICNHSTKKIVDHIVHMRVHNINSNFQCLMCDFRTKDINEITEHATNHEDLLKYWCASCKKSFSILQHFQEHDNYHTGLKPFDCLYCDKSFLYSRYLHAHKITMHKDLMSCPSSYVCVICAKVYQHRNSLKLHMNSHTGNFAVCDICGKTLSSKEKLKFHLRTHTGYKPYSCQYCGKSFTKKPILVEHVRVHTGEKPYICDYCSKGFSQRSSLVIHMRGHTGEKPYGCQFCGKAFVAKAMLNIHLKSCRGLFQVVTKMEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -