Dpon009775.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- topi
- Assembly
- GCA_000355655.1
- Location
- NW:630964-635813[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0024 0.13 12.1 3.0 2 21 91 110 90 111 0.94 2 14 0.001 0.053 13.3 5.0 1 23 136 159 136 159 0.97 3 14 0.055 2.9 7.8 2.3 3 23 166 186 164 186 0.94 4 14 0.00084 0.043 13.5 0.9 2 21 205 224 204 225 0.94 5 14 5.5e-06 0.00029 20.4 1.8 2 23 255 276 254 276 0.97 6 14 0.48 25 4.8 0.0 1 19 282 300 282 303 0.79 7 14 0.064 3.3 7.6 2.4 3 21 320 338 319 342 0.84 8 14 0.0032 0.16 11.7 0.3 1 23 448 471 448 471 0.93 9 14 0.077 4 7.3 1.2 1 23 475 497 475 497 0.91 10 14 5e-07 2.6e-05 23.7 2.4 1 23 503 525 503 525 0.98 11 14 0.014 0.72 9.7 0.2 1 23 531 556 531 556 0.96 12 14 0.13 6.7 6.6 3.3 1 23 562 584 562 584 0.86 13 14 3.6e-05 0.0019 17.8 0.6 3 23 592 612 590 612 0.97 14 14 5.4e-07 2.8e-05 23.6 0.9 1 23 618 641 618 641 0.98
Sequence Information
- Coding Sequence
- ATGAGAAGCGCCGTGGTGATTCTGATCCACAAAGTGCTGGACGGCCAGATCGTGTCCAGTATCATGGACGAGAACAGAGGCAGCCCCCTAGTGATCCGCAGCCTGGCCAAGAAGACGGGGCCCCAATTCGATTTGGAGGGCTACGATGAGGCGAAAGTGTGCCTGAATTTCGCCCACTTGTTGGCGGACGATACGATAACAATTCGAGCTGTGGGGGAGGAGGCGCTTGAGTCGTCGCTGGTCATGGGGTTGAACTTTCCCACCTTAACCAAGTGCCAGAACTGCGAGACGAATTTCCCCACCAAGTACCAGTATCAAAGGCACCAGTGCGACTTCAATGAGGAAAAGCTGGTTTACAAGAATCCAGACGCACCCGCTGAGAAAAATGAGCGTCAATCACGGTTACATGAATGTCCCGTGTGTTTCAAGGGATTTGCCACTAAAGCCAGCATGGAGAAACACCATTCCACTTGCCACTTGGGCAACGACAGCATCTGCGAGTTCTGCAACAAGCACTTCGTAACGGACAATCGGCTGCGCATCCACAAGGAGAACCACTGCAAGAAGGCGGGGAAGATCTCCAAGTTCTACCGCAGCGATGTGACGGTGTGGAAGTGCAAAAAGTGTCATGAGGTGTTTTCTTCGGTGGACAACGCCCAGCATCACGTGCGGCTTTGCCAGGACGCCGCCCAGTTGCTCTCCATGGACGACGAGCTCTCCTTCTCCAAGCACGTGGAGACGATTTCCACGGAAATCCTCCTGCAATGTGAGTTCTGCAACCGTAGCTTCTCCGACAAAAACCTGCTGCTGATGCACCAGCGCAAGCACACCACGGCTAAGAACTACGAGTGCGTGAACTGCGAGCAAGTCTTCGACTCCTACACGCTGGCGGCTTCGCATTGGATAAAGCGCTGCACCGAGTTCGCCAACGTGTTCTTCCTGCCCAAGCTCTCCTTCTGCGAGTACTGCGACCGCACGTTCAAGTCCCACGAAATCCTCTACAACCACAAGATCAAGCAGAAGCACTATACTCCCAAGCTCCACATTTCCCTCAACGAGGAGAGCCCCATCAATCGCCCCCACACAACTGTGGAGAGCCAGAAAATCATCAACCGACTCATACAGGATGTGCTCAAAACTCTGGAGGTTCCAGTTAGTTCCATCAACAATGCCAGTGAAGCTGGGGCTAGTGAGATTAAAACTGAGCCAGTTAGCGACAACTCATGCAGCGCCAGCCAGGAGCAAGGGAACCGATCCGATAAGCGCCCCAAGAAGCGCAAGCCGCTACGAAGCGCCTCGAAGGCCAAGAAACACTGTCTGACTACTGATAAAGGTTTCAAGTATCAATGCGAGCGATGCATCAAGGTTTTCAACAGCATTTCCAGCCTGGAATCGCATCGATCGGGCGAACATGTCGCCACATTTTGTTGCGAGGAGTGCGGCCAAACGTTAGGGAGCGCAAAGGCGCTCCTAATTCACTGCAGGGCGCACAAGAGCCTCAAACCGTACGTCTGCGACACCTGTGGCAGGAGCTACTCCCAAACCTCCCACCTCTGGCAGCATATGCGGTTCCATCAAGGCATCAAGCCGTTTGCGTGTCCGCATGAAGGGTGCGAAGCCCGATACACGATCCGCCCGGACCTCAAGGACCACATTAGGAAGGTGCACACTAGGGAGCGCCCTTTCAAGTGCAGCGTTTGCAACAAGTGTTTCCTTACTGGGTCTGTGTATTATCAACATCGGCTCATCCACACGAATGATCGCCGATATGGATGCCTGATTTGCAATAAGCGTTTCTTTAGGGCTGACGCCCTAAACAACCACAAGCGAATCCATACGGACGAGCGGCCCTACCCATGTAACGTGTGCGGCAAAGAGTTTAGGCAAAAGGGCGATCGCAACAAACACTTGCGCACCCAGCATCCTGATCTTGTTGGTACCCacatttaa
- Protein Sequence
- MRSAVVILIHKVLDGQIVSSIMDENRGSPLVIRSLAKKTGPQFDLEGYDEAKVCLNFAHLLADDTITIRAVGEEALESSLVMGLNFPTLTKCQNCETNFPTKYQYQRHQCDFNEEKLVYKNPDAPAEKNERQSRLHECPVCFKGFATKASMEKHHSTCHLGNDSICEFCNKHFVTDNRLRIHKENHCKKAGKISKFYRSDVTVWKCKKCHEVFSSVDNAQHHVRLCQDAAQLLSMDDELSFSKHVETISTEILLQCEFCNRSFSDKNLLLMHQRKHTTAKNYECVNCEQVFDSYTLAASHWIKRCTEFANVFFLPKLSFCEYCDRTFKSHEILYNHKIKQKHYTPKLHISLNEESPINRPHTTVESQKIINRLIQDVLKTLEVPVSSINNASEAGASEIKTEPVSDNSCSASQEQGNRSDKRPKKRKPLRSASKAKKHCLTTDKGFKYQCERCIKVFNSISSLESHRSGEHVATFCCEECGQTLGSAKALLIHCRAHKSLKPYVCDTCGRSYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCSVCNKCFLTGSVYYQHRLIHTNDRRYGCLICNKRFFRADALNNHKRIHTDERPYPCNVCGKEFRQKGDRNKHLRTQHPDLVGTHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -