Dpon007724.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- -
- Assembly
- GCA_000355655.1
- Location
- NW:702935-706740[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.13 6.6 6.6 3.7 2 20 60 78 60 79 0.95 2 12 4.5e-07 2.3e-05 23.8 0.5 2 23 90 111 89 111 0.97 3 12 0.018 0.95 9.3 0.1 1 23 132 154 132 154 0.98 4 12 0.16 8 6.4 0.1 2 23 159 180 158 180 0.94 5 12 2 1.1e+02 2.9 2.5 2 23 187 211 186 211 0.74 6 12 0.025 1.3 8.9 2.0 1 23 217 239 217 239 0.92 7 12 3e-05 0.0016 18.1 0.9 1 23 245 268 245 268 0.97 8 12 0.00049 0.025 14.3 0.7 2 20 280 298 280 300 0.93 9 12 3.3e-05 0.0017 17.9 0.2 1 23 314 336 314 336 0.95 10 12 3.6e-07 1.9e-05 24.1 0.9 1 23 342 364 342 364 0.98 11 12 0.00026 0.013 15.1 7.2 1 23 370 392 370 392 0.99 12 12 0.00011 0.0055 16.3 0.9 1 21 398 418 398 419 0.96
Sequence Information
- Coding Sequence
- ATGACTACAAACGTTGCCGCTGGAACTCTCTGGGACCTACAAGCTAGCCTCATCCGAAAGTATTTAATGAGACTGAGAAAACAGCCCAAAGGGCAATCAGTTGAGAACTCTGACTGTGATTATGAATATACAGCAATGAGACCGTCGAGTAGCGGACGCTCAAAACTCGAATCACGGAAGTGTGATGggtgcttaaaaaaattcaagttgaaaaaatcgtgGCTGAAGCATCAGTGCCCACTTGCATCGAAAATCGATATAAACTGGCCATGTAAATATTGCCCAGAATCGTTTTCCACACAACGTCTGCTGCGAGTTCACCAAAAATCTCACAAGGCCAACAACTTCGAAGAAGAGGACCCTTCCTACAAATTTGATGTTGTTCAAGATTTGTATATTTGCGAAGTTTGTTCTgcagaatttcaaaaagtcaatGAAGTTCAGGCTCACATTAAAAGCCATTTGCCCGAACTGAAGTGTGATTTATGTGAGGAACTGTTTGAATCTGCTTTCGATTTAGGGGTACATTCGATGCAGCACAGTAcagacaaaaaaatcaaatgccCCTTCTGTACGTATGTCAGCAAAGGCTCGAATCCCTACAGCTTTAAGTCCCATATGAATTACATTCACCTTAAAAAGTTCCCCTTTTACTGCAAACAATGTGGGCAGGGcttcaaacaatttaaaatataccaAGATCATGAAAACTCCCACTCTGGCCGAAAACCGTATGTTTGCGTTGTCTGCAATAAGTcgtttacttttgaaaaatatttaattgtacaTCAAACGCGAACGCATCAAGTGTCTTCCGGAGACCCAAACATCGAAAGACGGTGCAAAAAATGTCAGCGagtatttagaaattttgagGCTCTCAACGAGCATCGTGAGTCGTGTGTTAAGAAAAAGACAACATTGAAGAAACCAAATTCGTTTCTATGCGACACTTGCGGTCAGGGTTTCATTGAAAAGGCCAAGCTTTTGAAGCATATAAGAGTGCATAAAGGTGATCTTCCATTCGTCTGTACTTGGTGCGACAAACGATTCCCTCAAAAAGACTATTTGAAAACACACGAACGGGTGCATACGCGTGAGAAACCGTACACGTGCCATTTCTGTGGCAAATGTTTCGGGTTCCATGCACCATTCAAAGTGCATATTAGAACTCATACAGGGGAGCGGCCTTATAAATGCGATTCTTGCTCCAAAGGTTTCACGACTAATCAGGGTCTGAAGCTTCATAGAAGGAACTGTCGCATGATtaactga
- Protein Sequence
- MTTNVAAGTLWDLQASLIRKYLMRLRKQPKGQSVENSDCDYEYTAMRPSSSGRSKLESRKCDGCLKKFKLKKSWLKHQCPLASKIDINWPCKYCPESFSTQRLLRVHQKSHKANNFEEEDPSYKFDVVQDLYICEVCSAEFQKVNEVQAHIKSHLPELKCDLCEELFESAFDLGVHSMQHSTDKKIKCPFCTYVSKGSNPYSFKSHMNYIHLKKFPFYCKQCGQGFKQFKIYQDHENSHSGRKPYVCVVCNKSFTFEKYLIVHQTRTHQVSSGDPNIERRCKKCQRVFRNFEALNEHRESCVKKKTTLKKPNSFLCDTCGQGFIEKAKLLKHIRVHKGDLPFVCTWCDKRFPQKDYLKTHERVHTREKPYTCHFCGKCFGFHAPFKVHIRTHTGERPYKCDSCSKGFTTNQGLKLHRRNCRMIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -