Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: -
Assembly: GCA_000355655.1
Location: NW:252-2094[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0013 0.069 12.9 0.4 2 23 103 125 102 125 0.92

2 13 0.0061 0.31 10.8 1.1 2 23 134 155 133 155 0.98

3 13 4.7e-05 0.0024 17.5 1.5 2 23 158 179 157 179 0.96

4 13 0.052 2.7 7.9 3.4 1 21 185 205 185 207 0.91

5 13 2.9e-05 0.0015 18.1 3.5 2 23 214 235 213 236 0.95

6 13 0.053 2.7 7.9 1.0 6 23 250 267 248 267 0.95

7 13 4.1e-06 0.00021 20.8 2.7 2 23 273 295 272 295 0.96

8 13 0.051 2.6 7.9 0.2 2 23 312 332 311 332 0.96

9 13 6.2e-07 3.2e-05 23.4 1.5 1 23 338 360 338 360 0.98

10 13 0.00051 0.026 14.2 0.3 1 23 368 390 368 390 0.98

11 13 0.00016 0.0083 15.8 4.1 1 23 396 418 396 418 0.98

12 13 2.4e-07 1.2e-05 24.7 3.2 1 23 424 446 424 446 0.98

13 13 0.00036 0.019 14.7 6.9 1 23 452 474 452 475 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0013	0.069	12.9	0.4	2	23	103	125	102	125	0.92
2	13	0.0061	0.31	10.8	1.1	2	23	134	155	133	155	0.98
3	13	4.7e-05	0.0024	17.5	1.5	2	23	158	179	157	179	0.96
4	13	0.052	2.7	7.9	3.4	1	21	185	205	185	207	0.91
5	13	2.9e-05	0.0015	18.1	3.5	2	23	214	235	213	236	0.95
6	13	0.053	2.7	7.9	1.0	6	23	250	267	248	267	0.95
7	13	4.1e-06	0.00021	20.8	2.7	2	23	273	295	272	295	0.96
8	13	0.051	2.6	7.9	0.2	2	23	312	332	311	332	0.96
9	13	6.2e-07	3.2e-05	23.4	1.5	1	23	338	360	338	360	0.98
10	13	0.00051	0.026	14.2	0.3	1	23	368	390	368	390	0.98
11	13	0.00016	0.0083	15.8	4.1	1	23	396	418	396	418	0.98
12	13	2.4e-07	1.2e-05	24.7	3.2	1	23	424	446	424	446	0.98
13	13	0.00036	0.019	14.7	6.9	1	23	452	474	452	475	0.96

Sequence Information

Coding Sequence: ATGATATTCTTCTATTCTCTAGCTAATATCAGTACTGTGGATATAGCGGCACTGAAGCAGGAACCGAAAGAGGCGATTTCCGCCGTGTCTGctgagaatttcaaaatgccACCTCCAATCGGCTTGGACATCAATAAGAAGAAGGTGAAGAAGTTGGTGATCAAACCCAAACCGAAAAAAGAGGTACAGGCGAGTTTCGATAATTTATTCACCAGCAGATTGAAGATGGAAGATTCCGAGGAAAGCGCCGCTGATGTGAAACTAGACAATAAGGAAGACGTCAAGGATGGCGCGACGTCGATTCTAATGTGCAAGATCTGCGATCTGAACTTCAAAACCAGAAAAGAACTGGGATTGCACAATAGAGCGTTGCACAACTACCGCAGATTGAAAGTGAACAAATGCGAGGTTTGCAAGGAACATTTCGATTTGGAGCGCGCCTTTAACGATCACCTCCGAATCCACCCGTTGGAGTGCAAAATGTGCGGAAAACTCTTTTACCGAAAATACGGCTTGAAGCTGCACACGTCCAGACATCTGGGAATTAAGCCGTTTAAGTGCGATCTATGCGACAAAACGTTTTTGGTCAAGCAAAAGCTGGAGGAGCATCGCAACTGCCATACGGGCAATCGTCCCATTAAATGCTCCATGTGCCCATCTACGTTCAAGAGGTATTCGAACTTGATCCAACATCGGAACAAGCATCATTATATGATTCCTCCAAAAACTCGCGATTATATTTGCTTCTGTGGCAAGCTGTTCCAGACGAAGAAAAAACTGGCTTGGCATCGGGAAATTCACGACTCCAACCCGAAATCGTGCACTGAATGCAGCGAAAAGTTCATTCACAAGGCCAGTCTAACGCGGCATATGAGAAGAGCGCATAATTCTGAGTATTTGCCCGACAATCGAGATCCTTCACAGGCGAACACTGAATGTCCAGTGTGCAAAGGCACTTATCTGAAAACCTCGCTAGACGCTCACCTGCGCACCCACACCAATATCAAGCAATTCAGCTGTCCAATTTGCAGCAAAGAGTTTACCACAAAGTGGAACCTGAAGTTGCACAGATACACTCACGAGTCGAGAACGCAAAAACCGTTCAAGTGCGCTCTATGTAGGGGCGCGTTCATACGCGAGAGCGACTTTGTCTCGCACATGAACTCGCACAAGAACGTCCAACCCTACACGTGCAACTACTGCGGTGCGAAATTCATCCGCAAGTACAACTGTCAGCGGCACGTGAAAGAACACGAGAACGCCAAGATGTACAACTGCGAGTTGTGCGGTAAGTCGTTTCATCGTTCCTACTACTTAAAGGATCATATGCGAATACATAGTGGGGATAGGCCGTATTCATGTCACATCTGCGGTAAAACCTCGACAACCAAGTCGAATCATAACAAGCATGTGAATATCCATCATGCAAGGGAGCCAGTAACCACTGAATCCTAA
Protein Sequence: MIFFYSLANISTVDIAALKQEPKEAISAVSAENFKMPPPIGLDINKKKVKKLVIKPKPKKEVQASFDNLFTSRLKMEDSEESAADVKLDNKEDVKDGATSILMCKICDLNFKTRKELGLHNRALHNYRRLKVNKCEVCKEHFDLERAFNDHLRIHPLECKMCGKLFYRKYGLKLHTSRHLGIKPFKCDLCDKTFLVKQKLEEHRNCHTGNRPIKCSMCPSTFKRYSNLIQHRNKHHYMIPPKTRDYICFCGKLFQTKKKLAWHREIHDSNPKSCTECSEKFIHKASLTRHMRRAHNSEYLPDNRDPSQANTECPVCKGTYLKTSLDAHLRTHTNIKQFSCPICSKEFTTKWNLKLHRYTHESRTQKPFKCALCRGAFIRESDFVSHMNSHKNVQPYTCNYCGAKFIRKYNCQRHVKEHENAKMYNCELCGKSFHRSYYLKDHMRIHSGDRPYSCHICGKTSTTKSNHNKHVNIHHAREPVTTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00431629;
90% Identity: iTF_00431629;
80% Identity: -