Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: -
Assembly: GCA_000355655.1
Location: NW:274822-286562[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.6 83 3.2 0.4 6 20 10 24 5 26 0.87

2 15 0.53 27 4.7 0.1 2 20 35 53 34 55 0.92

3 15 0.14 7.4 6.5 0.2 1 12 114 125 114 128 0.90

4 15 0.066 3.4 7.6 4.5 1 20 254 273 254 275 0.94

5 15 0.026 1.4 8.8 2.9 1 23 298 320 298 320 0.99

6 15 2.4e-05 0.0012 18.4 3.7 1 23 339 361 339 361 0.98

7 15 0.0041 0.21 11.4 0.1 1 23 394 415 394 415 0.95

8 15 3.7e-05 0.0019 17.8 0.4 1 23 420 442 420 442 0.98

9 15 0.0005 0.026 14.2 0.3 1 21 448 468 448 469 0.94

10 15 1.8e-05 0.00095 18.7 2.4 1 23 476 498 476 498 0.98

11 15 2.5e-05 0.0013 18.3 3.0 1 23 504 526 504 526 0.97

12 15 0.00011 0.0058 16.3 9.6 1 23 532 554 532 554 0.99

13 15 3.2e-05 0.0016 18.0 0.2 1 23 560 582 560 582 0.97

14 15 4.1e-05 0.0021 17.6 0.1 1 23 586 608 586 608 0.97

15 15 0.00022 0.011 15.4 0.1 1 23 616 639 616 639 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.6	83	3.2	0.4	6	20	10	24	5	26	0.87
2	15	0.53	27	4.7	0.1	2	20	35	53	34	55	0.92
3	15	0.14	7.4	6.5	0.2	1	12	114	125	114	128	0.90
4	15	0.066	3.4	7.6	4.5	1	20	254	273	254	275	0.94
5	15	0.026	1.4	8.8	2.9	1	23	298	320	298	320	0.99
6	15	2.4e-05	0.0012	18.4	3.7	1	23	339	361	339	361	0.98
7	15	0.0041	0.21	11.4	0.1	1	23	394	415	394	415	0.95
8	15	3.7e-05	0.0019	17.8	0.4	1	23	420	442	420	442	0.98
9	15	0.0005	0.026	14.2	0.3	1	21	448	468	448	469	0.94
10	15	1.8e-05	0.00095	18.7	2.4	1	23	476	498	476	498	0.98
11	15	2.5e-05	0.0013	18.3	3.0	1	23	504	526	504	526	0.97
12	15	0.00011	0.0058	16.3	9.6	1	23	532	554	532	554	0.99
13	15	3.2e-05	0.0016	18.0	0.2	1	23	560	582	560	582	0.97
14	15	4.1e-05	0.0021	17.6	0.1	1	23	586	608	586	608	0.97
15	15	0.00022	0.011	15.4	0.1	1	23	616	639	616	639	0.95

Sequence Information

Coding Sequence: ATGGCCTCACTTGCTTGTCCACTATGCTGTAGTGAACAGTTTTCGTCCCACCTGGAGTTAAACAACCACATCCTGGGCATGATAGATAATATTGATAATCTGTATTGTCCTTCTTGTAAGGAACCCTGTGAAGATTTAGTGGATTTGGCTGATCATTTGACAAAAGAGTGTGTAAATCTGCCCAAATCAGCAGGGCCTAAAAGTGCCACAGCTGacattaaagtgaaaattgagCCCCCCAATACAACTATATCAGATAATGTCAATGAAAGTACTGACGCAACATCTACAGAAAACGCCATCGAACTCAAAAGCATCCAAGATGACCCCACTGTGATTTATAGTTGTGATATGTGTAACATGACCTTTACTTCAGTAGAAGACCACTTATCCGAGTACCATTATGGCGAAGAAGTTTTGTTGGAAACTGAAGAAGTAGAAGATCAACTTGCTGAAATCGGAGCTGATGAGTCTGATGTTTTCCCTGGTGAGAATTTTGATGCTTCAGTTGAGGATAATGCTTCAGTTGAGGATAATGCTTCAGTCATGGACATGTATACTGAGCAGCAAATCAGGTCTGCATCGGAAAACCATTTAGATGACGAGGAAGGAAGAGAAGATTTGTTAGAAATCGGTGATACGAGCGTCAATGAAAACATTGAACCCAGAACAACCAAATATTTAATCGAAGACGGTAAAATAAGCACTATTAGTGATGAAGACGCAGCTTTACACGATCAggagaaaatttttcatatctaCAACTGTTCGAACTGCAAGTTAAAATTCCCATACATATCCCATTTTAATCGGCATAAATGTGCGCTTAAAAGAAAAGCggtaaaagtggaaaaacggGGTGAAATACTCAAGATTAAAGAAGGATTACGTTATCAATGTACTTTTTGCCAGACTGCATATTCTTGTCTAATATCTTTAAACGACCACATGAAGTCGCATTTAATTGAAGATCAATCAGgcaTGGTACAAAAGAAGGCGGTTACCATGACTCTTCATCAGTGCAACATTTGCAATACCAAGTTTCCAACTTTTAAACAGTTGCGACTTCACCTGAGGATGCACGATCCTGTCAAGACAAAGAAAGTTGAGCCACCTGTTTCTTACAACATGATGGGGCAAACTGACGACAATAatcaaaattctgaaaaacgAGATAAGTTTGAATGCCCTATTTGTGGAAAGGAATATGATAAGGGATATGAAGAAGTGCACATGAAATCTCATGAAAAGAACCAGTTTACTTGCGTAATATGCAACAGGAAGTTTGAACTTCAAGAAAATCTAACGCTACATATAAAAGcACACTCCAatcataaaaagtttatttgctCATATTGCAAGAAACCTTTTCAAACTTATGAGGCGCTTGAACAGCATGTTAATAAGAAATGCCAACGAAGAGACTTTGAGTGTCAGTATTGTGGAAGAAGATTCAGCAGACCACATGAGAAAGTTAAACATGAAAGAATACACACAGGAGAGAAACCTCatatttgtgaaatttgcGGAAAATCATTTAGAATCGGATATTGCCTTACGTTGCATATGCGTACTCACACAGGTAATAGGCCTTATACATGTGATCACTGTGGAAAAAGATTTAAATCATGCAGCGTTTTTAATCACCATTTGAAAACGCATTCCGAGGATAGAAATTACAAATGTCCATATTGCCCGAAAGCGTTTAAGACTGCTGTTCAGATAGCGGGGCATAAAAACAGTCACACCAAACCTTTTGCATGCACCGAGTGCAACCGGCCATTTGCCTCGCTCTATGCTGTAAGAGCTCATATGGATACCCATTCCCGAAAGAACAACCTCAAACACGAATGTTGGGTTTGTGGCGCCAGTTATGCCCGATCTTTTGCTCTTCGAGACCATATTAATGAAGTGCACGCAGACGAGGAAGCTGcTAGAAATAATGACGAGCAAGACGTTATGGAGACGGAAGTTCAGCTAAGTGTTGACAACCAAAGTGCTTCGGAGGAGGTGGGCGaagaaaatcagtttcaacAAATACCAGCAGAATCTGAGGAAACTTCCCAAGATCAAGAAATGGGCGAAGAGGACGAGAATGACGTGTATGAAGTTCAGCTGCAAGATGGCGACCCGGTCCAGGAAACTGATATGCAGTAG
Protein Sequence: MASLACPLCCSEQFSSHLELNNHILGMIDNIDNLYCPSCKEPCEDLVDLADHLTKECVNLPKSAGPKSATADIKVKIEPPNTTISDNVNESTDATSTENAIELKSIQDDPTVIYSCDMCNMTFTSVEDHLSEYHYGEEVLLETEEVEDQLAEIGADESDVFPGENFDASVEDNASVEDNASVMDMYTEQQIRSASENHLDDEEGREDLLEIGDTSVNENIEPRTTKYLIEDGKISTISDEDAALHDQEKIFHIYNCSNCKLKFPYISHFNRHKCALKRKAVKVEKRGEILKIKEGLRYQCTFCQTAYSCLISLNDHMKSHLIEDQSGMVQKKAVTMTLHQCNICNTKFPTFKQLRLHLRMHDPVKTKKVEPPVSYNMMGQTDDNNQNSEKRDKFECPICGKEYDKGYEEVHMKSHEKNQFTCVICNRKFELQENLTLHIKAHSNHKKFICSYCKKPFQTYEALEQHVNKKCQRRDFECQYCGRRFSRPHEKVKHERIHTGEKPHICEICGKSFRIGYCLTLHMRTHTGNRPYTCDHCGKRFKSCSVFNHHLKTHSEDRNYKCPYCPKAFKTAVQIAGHKNSHTKPFACTECNRPFASLYAVRAHMDTHSRKNNLKHECWVCGASYARSFALRDHINEVHADEEAARNNDEQDVMETEVQLSVDNQSASEEVGEENQFQQIPAESEETSQDQEMGEEDENDVYEVQLQDGDPVQETDMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -