Dpon006568.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- -
- Assembly
- GCA_000355655.1
- Location
- NW:4489-13003[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.44 23 4.9 4.5 1 23 113 135 113 135 0.85 2 15 7.6 3.9e+02 1.1 3.3 2 23 141 162 141 162 0.93 3 15 0.042 2.2 8.2 6.5 1 20 168 187 168 190 0.93 4 15 1.5e-07 7.6e-06 25.3 2.4 1 23 196 218 196 218 0.99 5 15 0.0022 0.11 12.2 0.9 1 23 225 247 225 247 0.97 6 15 0.00011 0.0057 16.3 6.5 2 23 255 276 255 276 0.98 7 15 7.3e-05 0.0038 16.9 1.9 1 23 281 304 281 304 0.97 8 15 0.00014 0.0072 16.0 1.4 2 23 308 330 308 330 0.97 9 15 1.8e-05 0.00092 18.8 1.5 2 23 337 359 336 359 0.96 10 15 5.4e-06 0.00028 20.4 1.7 2 23 367 388 366 388 0.98 11 15 9.2e-05 0.0048 16.5 1.6 1 23 392 414 392 414 0.96 12 15 1.3e-05 0.00066 19.2 1.8 1 23 420 442 420 442 0.98 13 15 0.001 0.052 13.3 1.9 3 23 450 470 448 470 0.97 14 15 4.7e-05 0.0024 17.5 4.6 1 23 476 498 476 498 0.97 15 15 3.7e-05 0.0019 17.8 5.5 1 23 504 527 504 527 0.97
Sequence Information
- Coding Sequence
- ATGATGAGAGGCGATACTGAGTGTTCATATAATGCTCAATTTCAACAAGTTTTTATCAAGACCGAATTTGAATCGTCGCAAGGATCATCTAGTTCTTTAATATCAATTGAAAGCACTAAACTACTAAAAGATTCCTCAACACTCATTAGACGCAATGTCGAAGAAAGTGCTACTGAATCATTGTCATGTGagACGCCCAAGACTGAAATCGCAGAATTAAAAAGCGAACCAGCCGACGAGTTCATCGAGGAAGAGACGCAAGAGGAATTGTGCAGTGAAGATCAAGATGATATTGAATACCAGAAAcgattaataattgaaaatgaaacaactGTATACAGATGCCAAGATTGCAATGAAGTATTCCAGAAATTTCATCAGTATAAATTCCATAGAGCTCAGCACTCGATTGAAAGAAGAACCTGTAAAATTTGCCACTTATTATGCCAAGGAGTTACCAAGTTGAATGAACACATGTTTGTTCACACTGGCGAGAAACCTTTTAAATGTGATAAATGCAAGAAAGGTTTTACATCAGCGAATACTTTAAAATGTCACATGGAATGTCATCGATTGGAGTTTAACTTTAAATGTGAAACATGTGGGAAAACGTTCAAAACTAAACGATCATTGAGAGGCCACATGGATACCCATGCTAAGAAAGTGAAAGATTTTACTTGCATGTTTTGCAAAGAAGAGTTTCAAGTGGCCTCGGAATACCGACGGCATATTCTCCAACATGGTGCCCAGCCACCAGAACCCAAATGCAACATTTGCCACAAGgtttttaagTATCATACTCAACTTCGAACCCATCTGTCTTCTCATACGGAACTAAGATTTCCATGTCAGtactgcaataaaatattctccACGATGACCAAAATTAGGAAGCATATCAATCGAAGTCATGTGATAAATGAGTGCGAATTCTGCAAGAAAGTGTATTATGATAAGGCGGAATTTACTAAgcataaaaaaactgaacatgTGGAAGAAAAACCGACAACTTGTGAGTTTTGCCATAAAGTCTACGACAAACcgaaaaatttgcaagagCACATTCGTGTTCAGCACACTAAAGACGGAATGGAGAATAAATGCGAAACATGCGAGAAAACGTTCATCAACCGGTTCTTGCTGAACAACCATATCAAAACACATTACAAATGTTTCAAGTGTTCCAGTTGCAACATGACATTTGCATCGAGATATAATCTACAACTTCATTCAGTAACTCATACCAATGAAAGAAAGTACAAGTGTTTGATATGCTCTAAAAGCTACTCGTCCAAAGTTAGTTTGCAAAATCATACCACTAGTCACTTTGATGAGCGACCATTTGGATGCACTCAATGTGGAaagtactttaaaaataacagGAGACTCTACGTCCATAAAATGTCCCACGAAAcgaaactgaaatttgaatgttttactTGCGgcagaaaattcaaaactaaGCAGTATTTGAAGTCACATTTATACAAACACGACAAAGtTCAGCCCTTTAACTGTCCAAATTGTACCAAGCGATTTAAACACAAGAAAACCCTGGACAAACATATGTTAAAGCAGCATCGCCTACGAAAAAGTGCTGGCAAAGTATCAGATTCtcagaataaaaataaagtcttGGCAGACGTTGAATCTGAAGACGAGAATATGGAATCCACTGATGATTCGACAAGCGAAAACggtgcaaataaatcaaacagcGAAAATGGCTCAGAAGTGACTAATACGGGAGATTATCATTTGGATTACCGAGACGatatttttgagAACAACGCAGAGTTTTCCAAATCCGACGATCTGGACTTGTCTAACTTGGTAAATGTAAAAGTCGAACTTTTAGAAGATTGA
- Protein Sequence
- MMRGDTECSYNAQFQQVFIKTEFESSQGSSSSLISIESTKLLKDSSTLIRRNVEESATESLSCETPKTEIAELKSEPADEFIEEETQEELCSEDQDDIEYQKRLIIENETTVYRCQDCNEVFQKFHQYKFHRAQHSIERRTCKICHLLCQGVTKLNEHMFVHTGEKPFKCDKCKKGFTSANTLKCHMECHRLEFNFKCETCGKTFKTKRSLRGHMDTHAKKVKDFTCMFCKEEFQVASEYRRHILQHGAQPPEPKCNICHKVFKYHTQLRTHLSSHTELRFPCQYCNKIFSTMTKIRKHINRSHVINECEFCKKVYYDKAEFTKHKKTEHVEEKPTTCEFCHKVYDKPKNLQEHIRVQHTKDGMENKCETCEKTFINRFLLNNHIKTHYKCFKCSSCNMTFASRYNLQLHSVTHTNERKYKCLICSKSYSSKVSLQNHTTSHFDERPFGCTQCGKYFKNNRRLYVHKMSHETKLKFECFTCGRKFKTKQYLKSHLYKHDKVQPFNCPNCTKRFKHKKTLDKHMLKQHRLRKSAGKVSDSQNKNKVLADVESEDENMESTDDSTSENGANKSNSENGSEVTNTGDYHLDYRDDIFENNAEFSKSDDLDLSNLVNVKVELLED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -