Dpon003695.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- RGM1
- Assembly
- GCA_000355655.1
- Location
- NW:2895887-2899224[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00073 0.038 13.7 2.5 2 23 152 173 151 173 0.93 2 11 0.065 3.3 7.6 1.4 1 23 222 244 222 244 0.96 3 11 0.025 1.3 8.9 0.8 1 23 258 281 258 281 0.95 4 11 3e-05 0.0015 18.1 1.7 1 22 333 354 333 354 0.96 5 11 3.1e-07 1.6e-05 24.3 1.8 1 23 368 390 368 390 0.98 6 11 6.5e-07 3.4e-05 23.3 0.5 1 23 396 418 396 418 0.95 7 11 1.1e-05 0.00055 19.5 1.2 1 23 424 446 424 446 0.98 8 11 3.7e-06 0.00019 20.9 1.1 1 23 452 474 452 474 0.98 9 11 0.00011 0.0058 16.3 1.6 1 23 480 502 480 502 0.98 10 11 1.2e-07 6.3e-06 25.6 0.4 1 23 508 530 508 530 0.98 11 11 1.5e-07 7.8e-06 25.3 0.7 1 23 536 558 536 558 0.99
Sequence Information
- Coding Sequence
- ATGGAAAAAACAGATAGGTGTCGAATTTGTCGTGCAAAAACTAACaacttacaaaatatatttacatgtATAGAGCTAGAAGACTGCAAAGCTACTTTGCAACTCTCCGATATGATATGTTCCTTTACTCAAGTTCAGaTCACTTTATATGATGGCCTGCCAGATCAAATTTGTGGATCCTGTACAAATGCAACAgttcaaatgtatttatttaaactaagGATTGAAGAGAGCGAcagatttttgagaaacaaaCTGCTAGAAACGGAATCCAGCAGTTTATTgtcagaaaacatttttcgagtCGGTTTCGTATCCGAGAATGCGGATACCAActctgaaaatgtaaaaatgcttTCTAGCTTTgattgccaacattttctgaaCCAAGACAATGAAGAAGCCGCTAAACAGGATATTAATGTAGCCAGGTCACAAAAGGCCAAGAAATGTTTTTGCagtatttgtaataaaaagtttgccaAAGAAGATTCACTGCTTAAACACAAGATAGGTCATCTAATGGAAGTGCGAGATGTTGAAAGCAgcattctgaaaaataatgataatattgaattgaaaggACAAAACAGCCCTGTTATATATTTCAAGACTGTGGCATTAGATCCGAACAATGCGAACTTGGAAGGCAACGTTCAGTGCTTTTCATGTGTACTGTGCAATTGCATATTTCTCAATGAAGAGTTACTTAAAAAACATCTTAATGATCATGccatcaaaatgaaattaaataagatGGAAGATGGATACTTTCTTTGCAAATTGTGCGAGTATGAAACTAATGATATTCAAGAACTGAAAGTTCATACTCGCAGAAAGCACAGTGAAAAAAAAAGcaaTAATAAGTCTTTCTCTTGTTCACACTGCCTTATGGACTATTCAAAAGAAGGCTATTCGCATAATCATTTAGAGTATCACATAAACGACGAAAAGGATGTGAAGCTCTCCAAGAAAGCGGCAGGAATAAGTGATGGGTACTCCTGCAATCACTGTGATATGTTGTTCGAAACCAAAGTCCAATTACGGAGACATTTAAGAAAGTCTAACAGGGACCCACTAGTTGAGCCGGAAAAAAAACCTCACGTTTGCCAAATATGTTTGAAAGCATTTAACCAATTATCTAATTTAAAAGACCACATGAGGACTCATAATGGAGAGAAGCCGTTTTTGTGCCCCACTTGTGGAAAAGGCTTCAATCAACAGGGAAACTTAAAACAACATCAAGTGAGACACAGTGGAGTGAAGTCTCACAAATGCACTATTTGCAATTCTGGGTTTGCCAGTAGAGGAGAACTGAAAGCGCATCTCAGGAAACATACAGGTGCTCGACCATTTGTTTGCAGCTCTTGTGGAAATGGATTTACCACCTCCTCTTCCTTAACGAAACACAAGCGTATTCACTCGGGAGAAAAACCGTATGAGTGCGAGTTctgcaaaatgaaattttcccgATCTGGGATTTTGACACGACACAGGCGAATTCACACTGGTGAAAAACCGTACATTTGCAACATTTGTGAAAAAGCATTCACTCAATCCAACGATTTAACTTCTCATCAACGAATTCACACTGGAGAAAAACCATATAAGTGCGACGAATGCGGCCAGCCGTTCAGACAGAGTTCAGCGTTGAAAACTCATAAAAAGGTGCATTTAGCTACCAAACCAAAGCAAATTAAGCAGCAAAGTACACCGAAAGAGAAGGCAGTTTTTGTCGAAGATGGAGAAAACTTACTAATCAGTAGTTAA
- Protein Sequence
- MEKTDRCRICRAKTNNLQNIFTCIELEDCKATLQLSDMICSFTQVQITLYDGLPDQICGSCTNATVQMYLFKLRIEESDRFLRNKLLETESSSLLSENIFRVGFVSENADTNSENVKMLSSFDCQHFLNQDNEEAAKQDINVARSQKAKKCFCSICNKKFAKEDSLLKHKIGHLMEVRDVESSILKNNDNIELKGQNSPVIYFKTVALDPNNANLEGNVQCFSCVLCNCIFLNEELLKKHLNDHAIKMKLNKMEDGYFLCKLCEYETNDIQELKVHTRRKHSEKKSNNKSFSCSHCLMDYSKEGYSHNHLEYHINDEKDVKLSKKAAGISDGYSCNHCDMLFETKVQLRRHLRKSNRDPLVEPEKKPHVCQICLKAFNQLSNLKDHMRTHNGEKPFLCPTCGKGFNQQGNLKQHQVRHSGVKSHKCTICNSGFASRGELKAHLRKHTGARPFVCSSCGNGFTTSSSLTKHKRIHSGEKPYECEFCKMKFSRSGILTRHRRIHTGEKPYICNICEKAFTQSNDLTSHQRIHTGEKPYKCDECGQPFRQSSALKTHKKVHLATKPKQIKQQSTPKEKAVFVEDGENLLISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -