Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: -
Assembly: GCA_000355655.1
Location: NW:1253471-1263310[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.1e-05 0.0011 18.5 0.7 1 23 161 183 161 183 0.95

2 15 0.0001 0.0053 16.4 0.2 3 23 191 211 190 211 0.99

3 15 4e-05 0.0021 17.7 0.1 1 23 311 333 311 333 0.98

4 15 0.044 2.3 8.1 0.1 1 23 339 362 339 362 0.96

5 15 1.4e-06 7e-05 22.3 2.7 1 23 387 409 387 409 0.98

6 15 0.0087 0.45 10.3 0.0 1 23 422 444 422 444 0.94

7 15 2.6 1.3e+02 2.5 0.2 1 10 450 459 450 473 0.72

8 15 0.31 16 5.4 2.4 1 19 479 497 479 498 0.91

9 15 0.0016 0.083 12.6 4.5 3 23 509 529 507 529 0.98

10 15 0.0028 0.14 11.9 0.3 2 23 535 556 534 556 0.97

11 15 1.8e-06 9.5e-05 21.9 0.4 1 23 564 586 564 586 0.98

12 15 0.003 0.15 11.8 0.2 3 23 594 614 592 614 0.97

13 15 9.5e-05 0.0049 16.5 0.3 1 23 620 642 620 643 0.95

14 15 0.052 2.7 7.9 1.9 1 23 657 679 657 679 0.96

15 15 8.1e-05 0.0042 16.7 0.1 1 20 1060 1079 1060 1082 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.1e-05	0.0011	18.5	0.7	1	23	161	183	161	183	0.95
2	15	0.0001	0.0053	16.4	0.2	3	23	191	211	190	211	0.99
3	15	4e-05	0.0021	17.7	0.1	1	23	311	333	311	333	0.98
4	15	0.044	2.3	8.1	0.1	1	23	339	362	339	362	0.96
5	15	1.4e-06	7e-05	22.3	2.7	1	23	387	409	387	409	0.98
6	15	0.0087	0.45	10.3	0.0	1	23	422	444	422	444	0.94
7	15	2.6	1.3e+02	2.5	0.2	1	10	450	459	450	473	0.72
8	15	0.31	16	5.4	2.4	1	19	479	497	479	498	0.91
9	15	0.0016	0.083	12.6	4.5	3	23	509	529	507	529	0.98
10	15	0.0028	0.14	11.9	0.3	2	23	535	556	534	556	0.97
11	15	1.8e-06	9.5e-05	21.9	0.4	1	23	564	586	564	586	0.98
12	15	0.003	0.15	11.8	0.2	3	23	594	614	592	614	0.97
13	15	9.5e-05	0.0049	16.5	0.3	1	23	620	642	620	643	0.95
14	15	0.052	2.7	7.9	1.9	1	23	657	679	657	679	0.96
15	15	8.1e-05	0.0042	16.7	0.1	1	20	1060	1079	1060	1082	0.94

Sequence Information

Coding Sequence: ATGGAAAACGCAACGTTTGGACTAACTTGGGAGGACGCGACTACGGTCGTGCAAACAGAGGAGGTGATAACAACgatagaaaatgaaataattccGTCCCAATCGGAGGAATTTATGGACGAAGTTGAAAATGTCATGGAGGAAGAATTAGTAGACGATGTCGGAATGGTTGAGGAAGAGGTTGTTCAAGACAACTCCCAGCTGGATCAGGAGGTTTTAGAACAGCAAGATGGGGAACTGGTATATCTCTCAGACGGTAATGTCATAGTCATGCAAGAAAATCAAGAAGAGGCCTATTCCGAAGATCAGCTAATGGAAGTGACTGAGGAAGTTATAACCGACCAGTGGGGTGAAAGCTATCCGGAAGAAATAATCGTGGGATCTGAAGAAGCTGTTAGTGCTACAGGCAGTCAAACGCCTGGAGATGAGGACGATATTCCATTGCCGACAGACCAAGACGAATATACAGCTGCCAGACCATATCCATGCGACTTTTGCAGCCGAAGatttagaaaaaaagcaaatctCATGAACCATATGGTGGCACATCAAACCGATCGCCCGCATGGCTGTAACCTATGCGGAATCCGGTATGTGAGAAAAGCGGATTTAATGAACCATCTAAAAAGCCATGCATATATCTCAGACAATGCGCCAATAGAGGAAGACGAAGACACTTCATTGGTTGAGGATGGTTTTGATAGGGCTGAGAGGAAAGCTCGGGGTTATGGTAAACGGAAACGCAAGAAGCCCGTAAAAGACGAATACGAAAGTGTGTTTGTACCTGCGGATACAGcttcCTCAAGCGCTCAGTTTGAATACACTGAGTCGGGCGATATTAACTATATGGTTGGAGAAGCGGAAAGTAACAGCGAGTATATATCGAATCaggatgaaataaaatatcctGTTACGGATCCAAAAAAACCATTTGTTTGTCAACATTGTGGGGTGGCTTTTGCACGGGAAAAAGCATTGGCTTCACATGCCCGAGTACATGGAGGCGACAGCCCCTTCGAATGTCAGACATGTGGCGAAATGTTTTGGGATATTGCCCTTATGCAGGAACATGCCCGGACAAAACATGGAGAATTAGAGGATTACGATGACGACGAAGACGAGGATTATTCTGACTCGGAAGAAACCAAATATGGAACATTTTACTGTCCTACTTGTGGACTTTCTTTCCACAGACAGGACAACTTACGCAGACATAGCAGAATTCACATCAAAGAGGAGTatgtgaatgaaaatgaacttGGTCACATCTGTAACGTGTGCGGAGAATCATTTCAGgAAGCCTTAGATCTTCTGGCACACGCAGAGGTGCATGCTCGTGGGTCAGAATATCGCTGCATGATTTGTGGTGAAGTTTGCCTGGAAGAAATGGTTCTATCAAACCATGTCCAGAGTGCTCATAAGAATTTGCCTCCACATACTTGCATTTTATGTGGTCGCACCTGTAAGGATAGCAGAACTTTACTGAAACATTCATGGGAGCACTCTAAGGATAAACCATTTGGGTGCACAAGATGCAGCAAGACCTTTCATAATAGGGCTCGGCTAAAAAGGCACATGCTTTCACACAGaaacaaagTTGTCACTTGCGATGTGTGCGGCGAAGATTTTGCGGACGGTCGTAGTTTGATGAATCACAGACATAGTCATACCAGCATATCTGGGCGTCAGTTTCCTTGTAAAGAATGCGGGAAAACTTTTGGATCGAGAAGTTCCCAGCAAATACACATTCGCATCCATACagGTGAAAGGCCGTATGGGTGTCGATTTTGTTGGAAAGCTTTCGCAGATGGCGGAACTTTAAGAAAACATGAAAGAATTCATACCGGAGAAAAACCTTATGCGTGTGCCGTATGCCCTCGGGCTTTTAACCAACGAGTGGTTCTCAGGGAGCACATCAGGTCCCATCATTCAGGCCCCGATCCGAAATACTCTCATAGCATGACCCCTTACTGCTGCACTGTGTGTTCAGATATGTTCGCTACATCACAGGACCTAATATTGCATTTGATTCATCACTGCGACATGAACACTGCAATGAAAAGGCAGCCACAAGTTGGCCCGCGTAAATACAAACGACGAAGTACTACTTCTGATTTTAGGCGAAAACTCAAGCCGCATGAGTTGGATTCTATTGCAGCGCACAATCAACTGGCCGAAGAGAGGTACAATGCCAGACAAGAAGAAGCTGTGGATCAAGAgtatcaaaatcaattatcCGAAGAGGAGCCCGAAGTAAGGCGGCGCACGAGAAAGGCGTCTGTGAGAAAAGTGTCGACTTCATCGCCTAAAGCAAGcattagCGAATCGGTATCGGAGATCTACAATAGCTTACATACAATCGAAAGCAATGATTCAGTATTGCTTCCCAAATCGCCCACTTCTAAAGTGAAGtatactaaaaaaaaaataaacgaaggTGTCCCCATTCCGTCAAGGCCGAAAATGATCCATACTCAAAAAACCAGAGTGCCAGTTGAGACTGGAGAAGATGGACGAATTCGACATAAAACTCGAACTTTAGTTACCAGGACACAACCagctgaaataaaatcatCTACAGGGGAACGCATCAGACCGAGAACTAAAAACGTCAATTATCATATATTGAATGCAGAAAAACTGCCGTTGGCCACTTTCCCAATCGACGATCAGACAGAAGAAGCCgtcgaaaatttattaaggGAAACTGTTGACGATTCGGCCAATGGGGAAGTGCTAACAGAAGAGTTTGTGGAAGAAACGGATATTGCCGCTGAGCAAATCGTAGAGACTGAAGTGCCAGTCCCAGTTAGCCTTGTAGAAGTACGGACCAGAAGAAATAGCACTCGAAGTTCTAGAAATGTTATTGGTCCTGGTAGCAAAGTAAGATTGGTCAAAGAAGGCATGGtcgtttcaaaaattagacGGTCCAGTGAGTCCCAAAATGAACCCGAATCTATTTTGCCAGATATACACCATACTGATCAAATTTACGTGAAAGACGAACACCACAaCAATCAAAATCAGCATGACGATGTCGTTTCAGAAGCACCAGAGAATATATCGGAATATACCTCCAAGatgcaaaatatcaaaagagaACTGATGGATCCAAGTGCACTTCACGAGCTGGCAGAAATTTCCATGAGACATGCTAACAGTGCAactaacaacatttttaaatgcgaaatgTGTGACGAAGTTTTTACTGATAGAGGACAGTTATTAGTTCACGTTCCAATACATATTTGA
Protein Sequence: MENATFGLTWEDATTVVQTEEVITTIENEIIPSQSEEFMDEVENVMEEELVDDVGMVEEEVVQDNSQLDQEVLEQQDGELVYLSDGNVIVMQENQEEAYSEDQLMEVTEEVITDQWGESYPEEIIVGSEEAVSATGSQTPGDEDDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGIRYVRKADLMNHLKSHAYISDNAPIEEDEDTSLVEDGFDRAERKARGYGKRKRKKPVKDEYESVFVPADTASSSAQFEYTESGDINYMVGEAESNSEYISNQDEIKYPVTDPKKPFVCQHCGVAFAREKALASHARVHGGDSPFECQTCGEMFWDIALMQEHARTKHGELEDYDDDEDEDYSDSEETKYGTFYCPTCGLSFHRQDNLRRHSRIHIKEEYVNENELGHICNVCGESFQEALDLLAHAEVHARGSEYRCMICGEVCLEEMVLSNHVQSAHKNLPPHTCILCGRTCKDSRTLLKHSWEHSKDKPFGCTRCSKTFHNRARLKRHMLSHRNKVVTCDVCGEDFADGRSLMNHRHSHTSISGRQFPCKECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSMTPYCCTVCSDMFATSQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRSTTSDFRRKLKPHELDSIAAHNQLAEERYNARQEEAVDQEYQNQLSEEEPEVRRRTRKASVRKVSTSSPKASISESVSEIYNSLHTIESNDSVLLPKSPTSKVKYTKKKINEGVPIPSRPKMIHTQKTRVPVETGEDGRIRHKTRTLVTRTQPAEIKSSTGERIRPRTKNVNYHILNAEKLPLATFPIDDQTEEAVENLLRETVDDSANGEVLTEEFVEETDIAAEQIVETEVPVPVSLVEVRTRRNSTRSSRNVIGPGSKVRLVKEGMVVSKIRRSSESQNEPESILPDIHHTDQIYVKDEHHNNQNQHDDVVSEAPENISEYTSKMQNIKRELMDPSALHELAEISMRHANSATNNIFKCEMCDEVFTDRGQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -