Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: ZNF236
Assembly: GCA_000355655.1
Location: NW:51442-58049[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.15 7.6 6.5 1.2 3 23 151 172 149 172 0.96

2 22 5e-06 0.00026 20.5 0.8 2 23 178 199 178 199 0.97

3 22 1.2 64 3.5 0.3 1 23 205 227 205 227 0.92

4 22 0.019 0.97 9.3 0.3 2 23 238 259 237 259 0.96

5 22 0.00084 0.043 13.5 0.6 2 23 285 306 284 306 0.96

6 22 3.9e-05 0.002 17.7 4.6 1 23 312 334 312 334 0.98

7 22 4e-06 0.00021 20.8 0.7 1 23 340 363 340 363 0.96

8 22 0.00036 0.019 14.7 1.9 1 23 373 396 373 396 0.97

9 22 6e-05 0.0031 17.1 3.1 1 23 470 492 470 492 0.98

10 22 0.00055 0.028 14.1 4.4 1 23 498 521 498 521 0.97

11 22 4.1 2.1e+02 1.9 0.1 1 21 548 568 548 570 0.78

12 22 0.18 9.1 6.2 0.9 3 23 612 632 611 632 0.97

13 22 0.00033 0.017 14.8 1.7 1 19 662 680 662 684 0.91

14 22 0.0038 0.19 11.5 5.2 1 23 691 714 691 714 0.96

15 22 4.8 2.5e+02 1.7 3.5 5 21 884 900 882 901 0.91

16 22 0.00043 0.022 14.4 4.3 3 23 1024 1044 1023 1044 0.98

17 22 1.8e-05 0.00095 18.7 2.6 1 23 1050 1072 1050 1072 0.98

18 22 3.2e-06 0.00016 21.1 1.6 2 23 1081 1102 1080 1102 0.97

19 22 0.0017 0.089 12.5 1.5 1 23 1108 1130 1108 1130 0.98

20 22 0.049 2.5 8.0 3.5 2 21 1258 1277 1257 1280 0.93

21 22 0.0058 0.3 10.9 0.8 1 23 1286 1309 1286 1309 0.93

22 22 0.0031 0.16 11.7 0.5 1 23 1315 1338 1315 1338 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.15	7.6	6.5	1.2	3	23	151	172	149	172	0.96
2	22	5e-06	0.00026	20.5	0.8	2	23	178	199	178	199	0.97
3	22	1.2	64	3.5	0.3	1	23	205	227	205	227	0.92
4	22	0.019	0.97	9.3	0.3	2	23	238	259	237	259	0.96
5	22	0.00084	0.043	13.5	0.6	2	23	285	306	284	306	0.96
6	22	3.9e-05	0.002	17.7	4.6	1	23	312	334	312	334	0.98
7	22	4e-06	0.00021	20.8	0.7	1	23	340	363	340	363	0.96
8	22	0.00036	0.019	14.7	1.9	1	23	373	396	373	396	0.97
9	22	6e-05	0.0031	17.1	3.1	1	23	470	492	470	492	0.98
10	22	0.00055	0.028	14.1	4.4	1	23	498	521	498	521	0.97
11	22	4.1	2.1e+02	1.9	0.1	1	21	548	568	548	570	0.78
12	22	0.18	9.1	6.2	0.9	3	23	612	632	611	632	0.97
13	22	0.00033	0.017	14.8	1.7	1	19	662	680	662	684	0.91
14	22	0.0038	0.19	11.5	5.2	1	23	691	714	691	714	0.96
15	22	4.8	2.5e+02	1.7	3.5	5	21	884	900	882	901	0.91
16	22	0.00043	0.022	14.4	4.3	3	23	1024	1044	1023	1044	0.98
17	22	1.8e-05	0.00095	18.7	2.6	1	23	1050	1072	1050	1072	0.98
18	22	3.2e-06	0.00016	21.1	1.6	2	23	1081	1102	1080	1102	0.97
19	22	0.0017	0.089	12.5	1.5	1	23	1108	1130	1108	1130	0.98
20	22	0.049	2.5	8.0	3.5	2	21	1258	1277	1257	1280	0.93
21	22	0.0058	0.3	10.9	0.8	1	23	1286	1309	1286	1309	0.93
22	22	0.0031	0.16	11.7	0.5	1	23	1315	1338	1315	1338	0.98

Sequence Information

Coding Sequence: ATGGACAGTGTCCTAgcaatttcggaaaattgctTGTCTTCAGACCTTTTACAAATGGACCTCTTATTTGAGAGCCTGAAAATGAGCTCATCGCAAGCGGCTCCGAAATACACCATCCAGCAGCTGGATGAAACCCATTTCGAGCTCATTACCTGTGAAACTGATCGAACTTACAGTTTACACCTAACAGAGCAGCAGGCAGAAATAGTGGATTTCGAGCATTCAAATAAGGTCCCGGTCATTAGCAGCGTCCAGAAAGACTCAGTCATTCAGTACTCAGCAAGATCAGTTTTAAAGTCTGCCAACTCAAACCAGGACGCACCCAAAACTCACAGACCACCGGTAGATTCTGACGACGCAGTTTATTACGCCTGCTGCGCTATTCAGTTTGATGGTTTGCCCGCTTTTCGAGAACATTTAAAGttgCATGTGGCGGAGGAAAAATTCGGTTGCCCTCAATGCCACGCACGCTTTTTGACAGAAAACAACATGAAAATTCACATGGTCACGAAGCACCCGGGCAATTCCAATGTATGCCCCATATGCCAGAAATCGTTCCATCGAAAGGCCAGCTTGAAAGCTCACGTGCAAATCCATCAAGAGGAGGAAATGTACCCGTGCGCACGATGTTGCGAAGAGTTACCAAGTTACGATGCACTCTTGAAGCATATGGAGCGTCATGCAGTCATAAAGAAACCAATAGACCCACTAATGTGCCGCTATTGTAAAATCCAATTGGAAACGCCTGCACAGTATCAAAAACATTTAGCTACACACAAGGACAAGAGGAAAAACGGTCATAAAAACCGAAAGGCTAAAAAGAAACGCACAGGAAACCATCGCAAAAAGCTGATATGCCGGTTttgtacgaaagtgtttccAAAGTTCTACCTGTTGGAGCGCCATGAAAGAGTGCACACAGGCGAAAAGCCGTTTAAGTGTCACATTTGCCATAAAGGATTCGCGCAAAGCAACTCGTTGAAGCTACATCTGGACAAACACAAAGGCTTAAAACCCCATAGTTGTCCGCTCTGCCCGGCGAAATTCACTCAGAAAGGAAATCTTACCGCtcacataaataaaactcaCAACTCTCCGCATGAGAACAACGAAAACTATAGATGCCCCCAGTGTTCGTGTATGTTCAAAAGAATCTCATCCTTGAACGGCCATATCACTAAAGCCCATGTGGATACTGGGAATGGGACGCCTAAAGAGCAAACGGACCCGCAAAGCGTCATCGACAAAGTCGTCAGCGGTTTAAAGGAGTTGAATAATGACCCCAACCGATCTGTGTCCAAGCAGGACAAGGCGAAAATGCCCGAAGTCGATTTAGCAGAAAACCAGGGGGATAACGGCATTCGCCGTTATGCGATCCGACATGAAAAAATCGGCGATGTTCGATggtatttttgcaattattgctCCAGCCGATTTAAGAAACCCTCGGATCTCATCAGGCACTTTAGAACGCATACTTTGGAGAAGCCCTTTAAGTGCCCAAAGTGCGAGCaaacattttccttaaaaaccACTTTAACGCACCACTTCAAAATCCAGCACTCACCACTAGAAGTTGAATGCAGCACGACTGAGAGTTGTCAAGCGCCAGCAGCAGACCAGGAAGTAGTCAGAACTGACTATCTCTGCTTGGTATGTGAAAGGCGTTTTCCAACCATCGAGGAAAGTAAAGCGCACGGCTTGGAGCATGAAAACGAGTTTCAAACCAGTGACAACAGCTTCGAGTCCATTTCCGGAAATTTAGCGCTTCCATCTGCACGCTCGGCGCCCAGTGCCGTGGCTAATGAAACCGCCCAGGAAAACGCGCTGCTTTGCAAAATATGCGGTTTTAAATGTTCCGGAATAAACAGCTTGGCAAGCCACGTGATGCAGCACAATGACGACAAAAACTCTAATAACGCAGCGCGTCCACAgGAATCCGAGCGAAAAACGCAGGGGAACATCCacattaaaatttcgaaattcaaATGCTCGACTTGcggcaaaatatttaaaagtttggcACTGTTGACCACTCACTGCGCCATTCACAGGCGAGCGAAGCCCACTCACAAGTGTTCCTGCTGTGGCAAAGCTTTTAAGACCGCTGGTCGCTATCGGGCACACATGAAAAAGAGTCATCCGCAAAAAGAATTGTCCTTTGTTAAGCAGCCAGATAAGTTAGCCAACGGTGCTCAGAGCACTGCTGACTCAGCAGCGAGCAATGGAACACTTCTGAGCGTCGTCTCAGAAGAGCAAGGCTCTAATGCGCCTACCCAATTGCCAGCAGACTATGACATGATGTGTTTTAATATTAGTGGCAATGAGATTTTGAGCCAGAGCAGCCTGATTCCGAATATAAACCTTTATAATTCGCTGGACAGTTTGCAAGATTCCGCCACTGTTTTCTTTAACATTGACCCAGGTAAACCCGACATGGTGGATCCTAACGAAGTACTGAAGTATAATAAATTGGACAAACCTCAGTTGTCTGAAACCGCCTCAGAACCTGCTCAATCTGATACTCCACTTGAATCCGATGCCCAAGACCTTTACACCGTGAATCTGAGCGATATACCCATCAGCATTATCAGCTCTTCAGaAGAATTGGATAGCGACATAATATCCAACTCGCCAGTGCTTTGCATTAATTGCCACAAACTGTTCTCCAGTTGCGCGCTATTCGAAAATCACATCTGCTCAGAGGAACGAACTGCTGCAGAACAGAACAACTTGGAATTGATTATTCAGGATGGAACAACTCATACAGTCAAAAGCCAGattttcagcGAAACTGGTTCTGTGAACAACGTGCCAGTTATCCAATCTCCTGCAGTGGTGAAAAAGATGCccgaaataattttcgaatgcCCAACGTTCAGCATGCCGACGCCAGATCAAATCGTGGGCAATTTGCCCGGCGGTACAATAAAGTCTCAACTTCAGCACTATGTCGACGATGTGGAAGAAGCCCCGCAGATATActgcaaacattgcaaatcGGCCATGCAATCAGAAGAACAGTATCGTAAACACTTGTTTCTGCACCCAGATCTGGCTGACAAGATCTGCAAATACTGTTGCCGCGATTTTAAGAAGCCTTCCGACCTGAAACGACACCTGAGGACGCACACGGGCGAGAAACCGTTTGAATGCGACACTTGCCATAAGAAGTTTTCGCTTAAAGCCACGCTACAGGGGCATATTAGGACCCACAATATTGCAGAAGTCCCGAAAATCACCTGCAATGTTTGCAACACGAACTTCACCACCAAATCCTCCCTCAAACTGCATATGCTGAAGCATACAGGTGCCAAGCCTTATGCGTGCCAGTACTGCGAGCAGACCTTTCGTACCATAGGAACACGAAAAACCCATCAGaaaattcatttgaataatCAGAAAGATGCTGAAGATCCTGCGAAACTGGCAGGCGTTAAACTGATTAAGTACATGGCTGAGCAGATGGAAAGCAATGATTTGAGTAAAGGTCCACAAACCGTAGATAAGgaGCCCGTAGTGCTAGTTGACTCTCAACAGCTTAATTGGGTCCCGATGGAGTCCACTGAGCTTTTTCAGCAGCTGCAGCCGTATGGCTTTATTATCAGCTCAGAAGCTGAGTCGAACGTATCACGAACGGCGGACGATTTAGCAGCACTTGATGTAAATAGTGAGCTTCAGTTGAGTTCAACaaaattgccaGATATTCAAGTTGAAGACCAAAAGACAGAAAAACGCTCCCAGAAGAAACAAGAACGAAAGCAAAGGGTGGAATGTGACATTTGCCATAAATTGTACTCATCGAAAGACGTTCTACGGAAGCACAAAAAATGCTTGCACGGacaaaacaagaaatttcCCTGTATAAAATGTGATAAAGGCTACGATCAGCTAGATGATTTGCACAAGCATATATCGAAGTTACATTCAGGCCATCGGCCTTACACCTGCGACTATTGCTTGAACAGTTTTGGAGAGGAGGGTAGCTTGAAGACGCACATTAAGAGGATGCATCAAAAATGCCCCGTGCCAGAAGAGACTGACAGTGCGATTTTGGAGCTCGAGTACGACTTCTCTTCGCAGTATCCTTAA
Protein Sequence: MDSVLAISENCLSSDLLQMDLLFESLKMSSSQAAPKYTIQQLDETHFELITCETDRTYSLHLTEQQAEIVDFEHSNKVPVISSVQKDSVIQYSARSVLKSANSNQDAPKTHRPPVDSDDAVYYACCAIQFDGLPAFREHLKLHVAEEKFGCPQCHARFLTENNMKIHMVTKHPGNSNVCPICQKSFHRKASLKAHVQIHQEEEMYPCARCCEELPSYDALLKHMERHAVIKKPIDPLMCRYCKIQLETPAQYQKHLATHKDKRKNGHKNRKAKKKRTGNHRKKLICRFCTKVFPKFYLLERHERVHTGEKPFKCHICHKGFAQSNSLKLHLDKHKGLKPHSCPLCPAKFTQKGNLTAHINKTHNSPHENNENYRCPQCSCMFKRISSLNGHITKAHVDTGNGTPKEQTDPQSVIDKVVSGLKELNNDPNRSVSKQDKAKMPEVDLAENQGDNGIRRYAIRHEKIGDVRWYFCNYCSSRFKKPSDLIRHFRTHTLEKPFKCPKCEQTFSLKTTLTHHFKIQHSPLEVECSTTESCQAPAADQEVVRTDYLCLVCERRFPTIEESKAHGLEHENEFQTSDNSFESISGNLALPSARSAPSAVANETAQENALLCKICGFKCSGINSLASHVMQHNDDKNSNNAARPQESERKTQGNIHIKISKFKCSTCGKIFKSLALLTTHCAIHRRAKPTHKCSCCGKAFKTAGRYRAHMKKSHPQKELSFVKQPDKLANGAQSTADSAASNGTLLSVVSEEQGSNAPTQLPADYDMMCFNISGNEILSQSSLIPNINLYNSLDSLQDSATVFFNIDPGKPDMVDPNEVLKYNKLDKPQLSETASEPAQSDTPLESDAQDLYTVNLSDIPISIISSSEELDSDIISNSPVLCINCHKLFSSCALFENHICSEERTAAEQNNLELIIQDGTTHTVKSQIFSETGSVNNVPVIQSPAVVKKMPEIIFECPTFSMPTPDQIVGNLPGGTIKSQLQHYVDDVEEAPQIYCKHCKSAMQSEEQYRKHLFLHPDLADKICKYCCRDFKKPSDLKRHLRTHTGEKPFECDTCHKKFSLKATLQGHIRTHNIAEVPKITCNVCNTNFTTKSSLKLHMLKHTGAKPYACQYCEQTFRTIGTRKTHQKIHLNNQKDAEDPAKLAGVKLIKYMAEQMESNDLSKGPQTVDKEPVVLVDSQQLNWVPMESTELFQQLQPYGFIISSEAESNVSRTADDLAALDVNSELQLSSTKLPDIQVEDQKTEKRSQKKQERKQRVECDICHKLYSSKDVLRKHKKCLHGQNKKFPCIKCDKGYDQLDDLHKHISKLHSGHRPYTCDYCLNSFGEEGSLKTHIKRMHQKCPVPEETDSAILELEYDFSSQYP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -