Dpon001605.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- SALL1
- Assembly
- GCA_000355655.1
- Location
- NW:155443-163539[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4e-05 0.00071 19.1 0.0 1 23 227 250 227 250 0.94 2 13 0.00035 0.018 14.7 0.5 1 23 282 305 282 305 0.94 3 13 6.5e-05 0.0034 17.0 2.5 1 23 311 333 311 333 0.96 4 13 2.7e-05 0.0014 18.2 0.4 2 20 339 357 338 358 0.96 5 13 7.4e-07 3.8e-05 23.1 0.8 1 23 370 392 370 392 0.97 6 13 0.00025 0.013 15.2 0.3 2 23 404 425 403 425 0.97 7 13 1.8e-05 0.00094 18.8 0.3 1 23 431 453 431 453 0.97 8 13 3.6e-05 0.0019 17.8 0.1 1 23 459 481 459 481 0.98 9 13 1.9e-05 0.001 18.7 3.4 1 23 487 509 487 509 0.96 10 13 0.00018 0.0095 15.6 3.4 1 23 515 538 515 538 0.95 11 13 6.8e-05 0.0035 17.0 0.4 3 23 546 568 544 568 0.94 12 13 2e-06 0.00011 21.7 0.6 1 23 574 596 574 596 0.98 13 13 5.4e-06 0.00028 20.4 1.5 2 23 603 625 602 625 0.95
Sequence Information
- Coding Sequence
- ATGGCTGCACGAAATGTGGCCAAAAGGGAATTGGATGATGGTAGGGTAAAGATTGACCCAGAAGAGGCggaaattataataattgaaagCGTCAACGATTCCGAGGACGAGGCACACGATCAAATAATTTCCCGAGAGAACATTCCTCACATTCTACAAAACTACTCCAAGGCAAATGGAAACGTCCAGCTGGTCCAGTTGGATGATGGAGAGTATTCGTATATTATTGAAAACACTAATGAATGTGAGTCCGGCGTTCAGTACAATGTGACTGATAATGACCATTACATCATCGAAGAATACCAGGAGGACTCAGAGGAAACTGCTGCTGAGCTTCCTGAGTTCGAAACCATGTATATTGAGTCTGTGGAGTCACCTCATGAAGTCTACACATTATGCGAAGAGGATGAAACCAGTGTGGCTGATGAAGATCAGGAGATGGTAGTGGATGAAGAAAGTGAGATGATTCCTGATAAGCAAGAAGTAAAGGCAAATGACAATAAATCGTCTaaactctcaaacatatttataaaagtcCGAAAACAATCTACCAAAGCAGAGCATGTAAGCGAAGATCAGGCGCAAGtTACTGAAGAGAAATGCATTAATCCTGAGACAGTTGAGCAGGATTCTAAGACGATGCAGCAAGAAGAAGAGATATCTTCCATGGACTTTTTGTATGAATGTGGTATTTGCGGCAAGACCTTTTCCAGTGCAACAGGAGTGAAATGGCACATTAGTGCCAGCCACATTGATTCACCAGCTCCCACTACCGACCAATTGTCGTTTTCGCTATGTGCTTGTTGTGGGGAACCATCAGACTCAGCTCATACGACCGGAGACTTCAATTGCGATGAGTGTGGCAAACTGTTCATCTATCAGAACTCTTTGGACAGACACAAGAGCATTGAACACCCAGTTGgggataaatatttatgttacGAGTGCAAGAAAGTGTTCTGTAGAAAGGACCTTCTGGTGGAACACACAAAAGTTCACTCATTAAAGGCGGTGAAGTGCGGCGATTGCGGCCGGGAGTTTTCGAGAAAGTTCCATTTGGACCGACATATTGGGCAAACTGGCTGCATGGGATTGGTCAAGAAAGTCTACGACTGCAGAGTctgcaataaaacattcacACGCAAAGACAATCTAGCCGACCATCTGAAGGCACATGCAGGAATAGCGATGAAGAGAAGAAAACCGAGCACCTGCGAATTTTGCTTGAAGGAGTTCAGCGGAATCTCGCTCCTGCAAATCCACATCCGAACGCATACAGGGGAACGACCATTTGCTTGCGATGTTTGCGAGAAGAAATTTGCATCTGCAGGCGCTATGACGAAACATCGACGGAAACATACCGGGGAGAAACCCTATATATGTCCTCAGTGCGGGTCTCGATTTGCCGCGAAAGAGACGCTGAATCGCCACTGGCGAATCCATACCGGGGATAAACCACATAAATGCAGGTTTTGTGGAAAAGGATTTATCCAACCATCTCAGCTCAGAGCGCACATTTTCCACCACACTGGGGAGAATGCCTACAATTGCCCGCATTGCAATCGGGCTTTTAACCGAAAATTGCGCCTCACCACCCACATCAAGTTCATGCACGAAGGGGCTGCGCCCACACCCTGTCCAGAACCAGGCTGCGGGAAGACTTTCTTCCGCAAAGAAGACATCCATCGGCACTTGATAACGCATAGCGGCGAAAGGCCATACGAATGCGAGGTATGTAAGAAGCGCTTCGCGGTTAAATCGTCGTTGCGAGTGCACCGAAACATTCATCGAAAGGAAGCGCCGGTGTCTTGCGAGGTATGCAACAGGGCGTTTATCCGGAAGGATTGCCTTATGAGGCATATGAGAGCTCGGCACAGAGATGTTCTGGAAGATATCGTAACAAACGTTGAGAAGAAGCGACTGCAAACCCAATTATTCCAGGCAGTGGCCAATGCAGCCAACACGGAATCCTTGAAACAGTCGATAGTTTGGAACGAATTGACCTTAACTGAATCAATCAAGGAACTTCTGACTCTGCTGGTTGATGACGATTGCCTATTGGAGTTGGGTCATCCAGATGCTCCAGTAGATCGCGTTTTGGAAACGGTCATTCGACGATGCGGCCACACGCCTGCTTCGGAGAGTGATTTTGACTACATCGGAAAAATACGCGAAAATGTCAAGCTGCTTTTCACGGCGGTGATCGACGATAACTCCATTAAAGACCTGCTGAAAAGTCATACAATAGACGATGTTATTATGCACGTTTTAAAATTGGCTAGGAAGCGGGCTGATGGCACACTTTCGGACGCTGATGATAATGACCATGCAGATGATCCAGATCCATTGGGTAATCATACTGATGAGGATTCCAGTTCCGTGGAATAG
- Protein Sequence
- MAARNVAKRELDDGRVKIDPEEAEIIIIESVNDSEDEAHDQIISRENIPHILQNYSKANGNVQLVQLDDGEYSYIIENTNECESGVQYNVTDNDHYIIEEYQEDSEETAAELPEFETMYIESVESPHEVYTLCEEDETSVADEDQEMVVDEESEMIPDKQEVKANDNKSSKLSNIFIKVRKQSTKAEHVSEDQAQVTEEKCINPETVEQDSKTMQQEEEISSMDFLYECGICGKTFSSATGVKWHISASHIDSPAPTTDQLSFSLCACCGEPSDSAHTTGDFNCDECGKLFIYQNSLDRHKSIEHPVGDKYLCYECKKVFCRKDLLVEHTKVHSLKAVKCGDCGREFSRKFHLDRHIGQTGCMGLVKKVYDCRVCNKTFTRKDNLADHLKAHAGIAMKRRKPSTCEFCLKEFSGISLLQIHIRTHTGERPFACDVCEKKFASAGAMTKHRRKHTGEKPYICPQCGSRFAAKETLNRHWRIHTGDKPHKCRFCGKGFIQPSQLRAHIFHHTGENAYNCPHCNRAFNRKLRLTTHIKFMHEGAAPTPCPEPGCGKTFFRKEDIHRHLITHSGERPYECEVCKKRFAVKSSLRVHRNIHRKEAPVSCEVCNRAFIRKDCLMRHMRARHRDVLEDIVTNVEKKRLQTQLFQAVANAANTESLKQSIVWNELTLTESIKELLTLLVDDDCLLELGHPDAPVDRVLETVIRRCGHTPASESDFDYIGKIRENVKLLFTAVIDDNSIKDLLKSHTIDDVIMHVLKLARKRADGTLSDADDNDHADDPDPLGNHTDEDSSSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -