Dpon010215.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dendroctonus ponderosae
Gene Symbol
-
Assembly
GCA_000355655.1
Location
NW:496847-503640[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00044 0.023 14.4 0.8 2 23 142 163 141 163 0.96
2 16 0.00017 0.009 15.7 2.4 2 23 170 191 170 191 0.97
3 16 0.0022 0.11 12.2 4.8 1 23 198 220 198 220 0.97
4 16 5.6e-06 0.00029 20.4 0.8 1 23 368 390 368 390 0.99
5 16 0.00016 0.0084 15.8 8.4 2 23 397 422 396 422 0.91
6 16 0.00025 0.013 15.2 3.1 2 23 439 461 439 461 0.96
7 16 0.0012 0.06 13.1 4.1 1 23 535 557 535 557 0.97
8 16 0.0008 0.041 13.6 1.4 1 23 563 586 563 586 0.95
9 16 4.9e-06 0.00025 20.6 1.6 1 23 591 613 591 613 0.98
10 16 1.5e-05 0.0008 19.0 4.3 1 23 622 644 622 644 0.98
11 16 1.4e-06 7.5e-05 22.2 1.6 1 23 651 673 651 673 0.94
12 16 1.3e-06 6.9e-05 22.3 1.6 3 23 685 705 683 705 0.96
13 16 4.3e-05 0.0022 17.6 4.5 1 23 711 733 711 733 0.99
14 16 2.6e-05 0.0014 18.3 1.7 1 23 739 761 739 761 0.96
15 16 4e-07 2.1e-05 24.0 0.4 1 23 767 789 767 789 0.99
16 16 0.00025 0.013 15.2 0.1 1 22 795 816 795 819 0.91

Sequence Information

Coding Sequence
atgattcCAAAGGATATTCAGTTAATGATTGACAAAATATGTCGATCTTGCATGTGCGAGAGTGGCGATATGCGGAACGTATTCGAAAAGTGTTTGGAACTAGCCGAAGATGGTTTACTTATCTGCGATATGCTCATGGCTTGCAGTGAAGTCGAGGTGTCAACTGGCGATGGTTTGCCTTATCTTCTCTGCTCGCCATGTGAATTAAAGCTACGGTCAGCTTATGAGTTTAAGCAGcaatgtgaaaaatcagaCATTGCGTTGAGGAAACTGAAGAATGGAAAAGATGCCCAACGTAATCATGAAGAGGACATCGTTATTCAGCCTGATGTTCATGAGGAATTGTTCAACGAGGAGGAAGAGGATGAGGATGATTTGCCATTATCGAAAAGAACTCATGGGGTTCCTTCCCACAGTGACTTGACCTGCAGTTACTGTATGAAAATCTTTACATCTAAGAGAAGCCTAGCAGTCCATGTACGTCAACACATAGGCGATGGTGTGAGGTATTGCCCAGTTTGTCCTTCAAAGTACACTCGCACCAACCATCTGATGAGACACATGAAATCCCATGATAAGCCTGGACGGAAACATTCGTGCAAAATTTGTGGTGATCGATTTTCTCAAACGTGCAGTCTTTACAGGCACATCAAAGTGCACATAGACGAGGCTGAAAAAAGGTCCAAAGAAGATGCTGAACAAGACGCGCTAATTGAtgtcaaaaaagaaaaaactgagGCATTCGTGAAGGCGGAAAGCGAAAAAGAGAATGATGTAGCTGCTGTGCAGACTGATAACCaaaaagctgaagaaaacaAGGATCAGGCGGAGAATACCAAAAGTGAATTGAACGATGagaaactgaattttaatGAGGTTCTCAGTCCAAACGACGTTCATGGTGATGATTCAATGGACATTCCTCTTAGCCAATTCCCGTTTAGCGATGATGATGTAAACGACGACGACGATAATGATGAGGATTATAATGGAGAAGATGCATTAGCAAAAGAAGATGCCAAAGATGAAGATTTTGTCGTGAAGGAGGTCAAGGAAAAGAGACCCCGAGGAAGGCCCCCTTCGAAGAAAGATCATACTTTATATGAATGCAAAGAATGCAATAAAATCCTTACCACTTACAGCGGTCTGAAGGTACATCTCAGACGACACACTGGCTCAGATTTGTCAAAGTGCAAGGTAAGAGAAAAGCATTGTGATAAGTCCTTCACTAAGAAAAGTCATCTTAATAGACATTTACACTCCCATGGCATTGTTAGTGGGAAGAGTAAAATAAAAGGAGACAAAAAGattagAGAGTGCGAATTCTGTGAtcgtaaatttaaatacaaaaagagTTTTGTTCATCATATGCAGGTAGAGCATGGCATGTCGGACGTTGAAAGTGATACTGGGGAAAAGACTGaacaaatagaaattttaactAACAGTAACGAGAGTAAGAATAATGGAGAAAATGGAgATATGTCCATGGAAAATAACCCGGAAAATAGTGAGCTGGATGATATAATGGAGAAAATCGAAAACGAAGATATGGAATTAGGCGGCGACGATGagttaaatttgaaacgtAAAATGAAAGTTCACACTTGCCATGTTTGCAATGCAGGATTTGCTCGAGTGAATCATCTATCTAGGCATATGACTTTACATAGAGCTGTCTTGACTCACAAATGCGACCGATGTGAGCAGGCATTCTATACTGAGGATCTTCTGAAACAGCACATTGAACAACAGCACATTAATAAACCCTACGTTTGCACTACTTGCAATAAACCGTTCAGTAGAGGTGAGCACTTAATAAGGCATTTAAAGCTGCATCAGGAGGTCACAAACGAGGGCCAGCATAAATGTTCGATTTGCGAATCTGTATTTTCGAGATCTGATCATTTAGCCAGGCacacaaaaacacatttgatGCAGGATAAGCGACATGTGTGTATTGACTGTGGAAAAGCATTTAATCGACTAGATAATCTAAAGACGCATCAAAGAACACATACAGGATTGAAGGATAATTCCAAGCTGCATTTATGTGTCTATTGCGGCAAAGAGTTCAATAACTCCAGTAACATGATAGTACATATGCGACGGCACACTGGGGAACGCCCATATAAATGCAACGAATGCGGAAAAGGATTCCCGCGATCTCATGATTTGAAATGCCACGAACGAACGCACTCTGGAGAGAAGCCCTATTTGTGTACTCTTTGCGGAAAATCGTTCaacaaaagcaacaaattgCTGAGGCATAGTCGAGTGCATACAGGCGAGAGGCCATACGTTTGTAATATTTGTTCACGTGCTTTTACCCAATCAAACGATCTGGCTTTGCATATGAGACGACACACTGGTGCTCGGCCATATGCATGTGGAGTGTGTCCGGCGCGATTTATTCAATCGGGCCAACTGAAGAATCATCGAAGACAAAGTGGCCATTGGATGGAAACACAACCAGATTTGAAAGGAGGACACAGAGTGGAACCAGTAACATCATCAGTAGAACCAATgccaataaaattcaaaacatttggcaaaaatcgaaTGGTAAAATTGGAAGAACCGCAAGCTGAGCCCAGTGAAAATCAGCAGCAACCCCAGGTGCATCAACAACTTCAAAGACTAGAGCAACAGCCCCAGTTAGCGCAACTGCAGCAACCGCAAAGAATTTTGATGGGTATTATGGGAAATATAAAACTGCAGGCTGATGGGCAGCCACTGATAATTGACAGTAATAAGATTGTCGAGTTACCCGGTGGACAGTTGGGTTTAGTTACACTTCCTACGGTAATTCAAGGTGAAAACGGTGAAGAGATCAAATTAAAGACAGAAATAGGTAGTTATAATATGAACCAAGTGGAGGATGATATGGATAAACACGAAGTTGTCAGTGCCTCTAATGCCTTCCATGAAGGCGAAACAATCTCGTTTTCTACAGTACAAACTGCAACGACGTATACCTCAGCAGAAAACTTTACCTTCcaaacatttaattga
Protein Sequence
MIPKDIQLMIDKICRSCMCESGDMRNVFEKCLELAEDGLLICDMLMACSEVEVSTGDGLPYLLCSPCELKLRSAYEFKQQCEKSDIALRKLKNGKDAQRNHEEDIVIQPDVHEELFNEEEEDEDDLPLSKRTHGVPSHSDLTCSYCMKIFTSKRSLAVHVRQHIGDGVRYCPVCPSKYTRTNHLMRHMKSHDKPGRKHSCKICGDRFSQTCSLYRHIKVHIDEAEKRSKEDAEQDALIDVKKEKTEAFVKAESEKENDVAAVQTDNQKAEENKDQAENTKSELNDEKLNFNEVLSPNDVHGDDSMDIPLSQFPFSDDDVNDDDDNDEDYNGEDALAKEDAKDEDFVVKEVKEKRPRGRPPSKKDHTLYECKECNKILTTYSGLKVHLRRHTGSDLSKCKVREKHCDKSFTKKSHLNRHLHSHGIVSGKSKIKGDKKIRECEFCDRKFKYKKSFVHHMQVEHGMSDVESDTGEKTEQIEILTNSNESKNNGENGDMSMENNPENSELDDIMEKIENEDMELGGDDELNLKRKMKVHTCHVCNAGFARVNHLSRHMTLHRAVLTHKCDRCEQAFYTEDLLKQHIEQQHINKPYVCTTCNKPFSRGEHLIRHLKLHQEVTNEGQHKCSICESVFSRSDHLARHTKTHLMQDKRHVCIDCGKAFNRLDNLKTHQRTHTGLKDNSKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCNECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICSRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKNHRRQSGHWMETQPDLKGGHRVEPVTSSVEPMPIKFKTFGKNRMVKLEEPQAEPSENQQQPQVHQQLQRLEQQPQLAQLQQPQRILMGIMGNIKLQADGQPLIIDSNKIVELPGGQLGLVTLPTVIQGENGEEIKLKTEIGSYNMNQVEDDMDKHEVVSASNAFHEGETISFSTVQTATTYTSAENFTFQTFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-