Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: -
Assembly: GCA_000355655.1
Location: NW:735054-743305[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0017 0.089 12.5 3.9 1 23 430 452 430 452 0.98

2 18 0.00012 0.0062 16.2 1.2 1 20 458 477 458 480 0.94

3 18 9.5e-06 0.00049 19.6 1.5 1 23 486 508 486 508 0.98

4 18 2.8e-05 0.0014 18.2 2.2 3 23 516 536 514 536 0.98

5 18 9.5e-06 0.00049 19.6 4.7 1 23 542 564 542 564 0.99

6 18 1.9e-05 0.001 18.7 5.3 1 23 570 592 570 592 0.97

7 18 4.6e-06 0.00024 20.6 7.6 1 23 598 620 598 620 0.97

8 18 1.1e-07 5.5e-06 25.8 1.9 1 23 626 648 626 648 0.98

9 18 5.5e-05 0.0029 17.2 6.7 1 23 654 676 654 676 0.97

10 18 2.5e-06 0.00013 21.5 5.7 1 23 682 704 682 704 0.98

11 18 7.8e-08 4.1e-06 26.2 3.1 1 23 710 732 710 732 0.98

12 18 1.6e-06 8.1e-05 22.1 7.8 1 23 738 760 738 760 0.98

13 18 3.7e-05 0.0019 17.8 8.2 1 23 766 788 766 788 0.98

14 18 1.3e-05 0.00067 19.2 7.7 1 23 794 816 794 816 0.98

15 18 1.8e-05 0.00091 18.8 6.7 1 23 822 844 822 844 0.97

16 18 2.6e-05 0.0013 18.3 0.9 1 23 850 872 850 872 0.98

17 18 0.068 3.5 7.5 5.0 1 23 882 904 882 904 0.98

18 18 5.2e-07 2.7e-05 23.6 1.0 1 23 910 932 910 932 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0017	0.089	12.5	3.9	1	23	430	452	430	452	0.98
2	18	0.00012	0.0062	16.2	1.2	1	20	458	477	458	480	0.94
3	18	9.5e-06	0.00049	19.6	1.5	1	23	486	508	486	508	0.98
4	18	2.8e-05	0.0014	18.2	2.2	3	23	516	536	514	536	0.98
5	18	9.5e-06	0.00049	19.6	4.7	1	23	542	564	542	564	0.99
6	18	1.9e-05	0.001	18.7	5.3	1	23	570	592	570	592	0.97
7	18	4.6e-06	0.00024	20.6	7.6	1	23	598	620	598	620	0.97
8	18	1.1e-07	5.5e-06	25.8	1.9	1	23	626	648	626	648	0.98
9	18	5.5e-05	0.0029	17.2	6.7	1	23	654	676	654	676	0.97
10	18	2.5e-06	0.00013	21.5	5.7	1	23	682	704	682	704	0.98
11	18	7.8e-08	4.1e-06	26.2	3.1	1	23	710	732	710	732	0.98
12	18	1.6e-06	8.1e-05	22.1	7.8	1	23	738	760	738	760	0.98
13	18	3.7e-05	0.0019	17.8	8.2	1	23	766	788	766	788	0.98
14	18	1.3e-05	0.00067	19.2	7.7	1	23	794	816	794	816	0.98
15	18	1.8e-05	0.00091	18.8	6.7	1	23	822	844	822	844	0.97
16	18	2.6e-05	0.0013	18.3	0.9	1	23	850	872	850	872	0.98
17	18	0.068	3.5	7.5	5.0	1	23	882	904	882	904	0.98
18	18	5.2e-07	2.7e-05	23.6	1.0	1	23	910	932	910	932	0.98

Sequence Information

Coding Sequence: ATGAATAACGATAATCAGAACACGATTCAAAATGCACATGGCCCTAATCCAAACCATGAAcTTTCCCCACAAcggcaaaaccctaataccATTCCAACTGATTTGCGGGTGAACACCACTGCATTGAATGCCGTGGCATTAAGTAGCGTGGCCAAGTATTGGGTTTTAACCAATCTACTACCAGGCCCAATTCCGCAAGTTTCTGTATATGGATTATCCGGCGCAAACAGGGATAATCAAGGAAAACTCACCCAAGATGCTGTACTAAGTCAGCATGCTGCGGGTTTGCTGCAAGCTGATCCGCAGCTCTTGTTACAACAACATGGCCAAATTCCGGTTAGCATAGCGACAGCCCAAGGGGCGATTGGGATTCCGGCCGGGGCCATTCACTTGGACGCACATACCATCTCTCAACAGCATGCCCATCAGCAACACATTGAACACAACCAGATTACTCGGGAAGTAAGGATATCGAATGCCCAGCAGAATCACAACCAGCACAACTTGGTCCAAGTGCAAGTGAATCAAGACAATATGGTATCTGTGATTGACGTCAACCATGATAAGCACAAAGACATATTGGCTGCTCAAATTCAAGCTGCACATATGCAGCTCAACGAATCTCAGATTAACACCCAAGTGTCGGCGGTGCAGCAATTGCAGCAGCTGCAAGCCCAGCAAGTTCAACAGGTTTTGGACAATGTCATGGTGAGAATGGAATCGTCAATCGACCATAatcagcagcagcagcagcagcaacaacaTCAACATCAACAACAATCCCAGCAACAACAGTCGCAACCCCAATCTCATACGGACCAAACTTCTCTTAGTGATAACATGGAGAAAGAGGAGAAATCCATCCAAAGTAAGTTCTTGAGCAATGCACAATTAGGGCTTCAAGAAGTTAAGGGCAGTGTTATGGATGTAAGGACAGCAGACGGAAGTATAGTCAAAATCCAAACCAACATGCAGGAACAAGATCTGGCAAAGACGTTGGGCGCAGAAATGGTCCAGAACATGTACAAAGTTAATGTAGACGACCTGAACCAGCTGTTAGCGTACCACGAGATTTTTGGCAAGCTACAAAGTCAAAGTGATGTTTCCAGCAATACCACCCAAGCTCTACCGCcagctaataataataacaataataataatgtcaGTTTACAACAGCCACAGAACTCGAGCATTTCAATTATAGCCAAATCCGAACACGAAGATGCTCAAAATAATTCGGCTATTCATCATAATGAGAATAACACCACTTCGGTTATTACTGGTAACCATCAGTGCGATCTTTGTTTGAAATCGTTCCAATTTCGTTATCAACTGATTGTTCATCGGCGGTATCACAGTGAAAAGAAACCATTTACTTGTCAGGTGTGTGGTAAAGCGTTTCCAAATGCTCAGGAGTTGTCCAGACATGGAAAATGCCACTTGGGCGGTAGCATGTTTACATGTACGATATGCTTTCATGTTTTCGCCAACGCGCCTACTTTAGAGCGCCATATGAAGCGCCATTCGGCCGATAAGCCTTACGGCTGTACCACATGTGCAAAAACCTTTGCCAGGAAAGAACATCTGGATAATCATATGCGAAGCCACACTGGAGACACCCCGTATAGGTGCCagttttgtggaaaaaactTCACCCGAAAAGAGCACATGGTGAACCATGTGAGGAAACATACTGGTGAAACACCTCATAGatgtgaaatttgcaaaaagtctTTCACCCGCAAGGAGCACTTTATGAACCATGTAATGTGGCATACTGGCGAAACGCCGCATTGTTGCACGATATGCGGCAAAAAATATACTAGAAAGGAACATCTTGCCAATCACATGAGAAGCCACACTAATGATACACCGTTCAGGTGCGAAATCTGCGGAAAGGCATTTACCAGAAAAGAGCATTTTACCAATCACATAATGTGGCATACGGGGGAAACGCCGCATCGCTGCGATTTTTGCTCTAAAACTTTTACTCGAAAAGAGCATTTATTAAACCACGTTAGACAACACACGGGAGAATCTCCCCATAAATGTGTGATCTGTAATAAGTCGTTTACCAGGAAGGAGCATTTGACGAATCATGTTCGACAACACACTGGCGAGACTCCTTTCAAATGTACTTACTGCCCAAAAGCGTTTACGCGAAAGGACCACTTAGTGAACCATATTAGACAACACACGGGAGAGTCCCCACACAAGTGCACTTACTGTACAAAATCTTTTACAAGAAAGGAGCACCTGAATAACCATATTAGACAACATACTGGAGAGTCACCGCACAAGTGccatttttgtgccaaatccTTTACCAGAAAGGAACATTTGACGAATCACGTTCGAATTCATACTGGCGAATCGCCGCACCGATGTGAGTTTTGCCAGAAAACGTTTACCCGCAAGGAACATTTGACCAATCACTTAAGACAGCACACAGGAGAAACTCCCCATTGTTGTAATGTGTGCTCGAAGCCCTTCACTAGGAAAGAGCATTTATTAATTCACATGCGATCGCACACAGGCGAAAGGCCATTCACTTGCACTGAGTGTGGAAAATCGTTTCCGCTTAAAGGCAATCTGTTGTTTCATCAAAGATCTCACAACAAGGGCCAACAGGCTGAAAGGCCATTTAGGTGCGATCTTTGCGAGAAGGATTTCATGTGCAAAGGCCACCTGGTGTCTCACAGGCGCTCGCACGGCGGAGAAAAGCCGTATAATTGCACGGAATGCGGAAAATCCTTCGGCGAAAAGGGCAATCTGTTGCGACACACCAGAAAACACGCGCTGGACCGGGAAAAGGCGGAATTGGCTGCAGAGCAAGCTATGGGAGCACAAGGTGCTGTACAACAGCAACAGCAGCACCAACCGAACCAAAACCCCAACAATTTGCAACAGTTGACACAAGTATCTCAACAATCGTTGCAGCAGggacaacaacaacaacaacaacaacatcaacaacaacagcaaaaTAACCCGAATATTGTACAGACTGGTCATCTGATTCATTCTGCCAACCATCTCTCTGTTGTGGTTCCTACAAATGCTAGTGTACTGGCGAGTTACTAA
Protein Sequence: MNNDNQNTIQNAHGPNPNHELSPQRQNPNTIPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLSGANRDNQGKLTQDAVLSQHAAGLLQADPQLLLQQHGQIPVSIATAQGAIGIPAGAIHLDAHTISQQHAHQQHIEHNQITREVRISNAQQNHNQHNLVQVQVNQDNMVSVIDVNHDKHKDILAAQIQAAHMQLNESQINTQVSAVQQLQQLQAQQVQQVLDNVMVRMESSIDHNQQQQQQQQHQHQQQSQQQQSQPQSHTDQTSLSDNMEKEEKSIQSKFLSNAQLGLQEVKGSVMDVRTADGSIVKIQTNMQEQDLAKTLGAEMVQNMYKVNVDDLNQLLAYHEIFGKLQSQSDVSSNTTQALPPANNNNNNNNVSLQQPQNSSISIIAKSEHEDAQNNSAIHHNENNTTSVITGNHQCDLCLKSFQFRYQLIVHRRYHSEKKPFTCQVCGKAFPNAQELSRHGKCHLGGSMFTCTICFHVFANAPTLERHMKRHSADKPYGCTTCAKTFARKEHLDNHMRSHTGDTPYRCQFCGKNFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHCCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCVICNKSFTRKEHLTNHVRQHTGETPFKCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLNNHIRQHTGESPHKCHFCAKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLLIHMRSHTGERPFTCTECGKSFPLKGNLLFHQRSHNKGQQAERPFRCDLCEKDFMCKGHLVSHRRSHGGEKPYNCTECGKSFGEKGNLLRHTRKHALDREKAELAAEQAMGAQGAVQQQQQHQPNQNPNNLQQLTQVSQQSLQQGQQQQQQQHQQQQQNNPNIVQTGHLIHSANHLSVVVPTNASVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00444375;
90% Identity: -
80% Identity: -