Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: Scrt1
Assembly: GCA_000355655.1
Location: NW:500148-510204[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00026 0.26 10.5 0.7 14 38 268 289 261 294 0.85

2 5 0.052 54 3.2 0.6 18 28 303 313 292 328 0.79

3 5 0.0034 3.5 7.0 0.3 17 28 328 339 319 351 0.80

4 5 0.00015 0.15 11.3 0.3 19 41 358 377 346 380 0.89

5 5 0.021 22 4.4 1.5 14 43 381 407 378 408 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00026	0.26	10.5	0.7	14	38	268	289	261	294	0.85
2	5	0.052	54	3.2	0.6	18	28	303	313	292	328	0.79
3	5	0.0034	3.5	7.0	0.3	17	28	328	339	319	351	0.80
4	5	0.00015	0.15	11.3	0.3	19	41	358	377	346	380	0.89
5	5	0.021	22	4.4	1.5	14	43	381	407	378	408	0.88

Sequence Information

Coding Sequence: ATGCCTCGCTGCTTGATGGCAAAAAAGTGGAAGGCCTACCCATGGGCGGAAAGGGAGCCCGCGAAAGACCCGGAGGAGGAAGAGGAGATCATCGATGTGGTCGGAGATTCGCAGGGGGCTTGCTGGGGCCCTTCCAGTCCTACGGAGGGGGCCACGGCACCTTCGCCGCCCCCTGGCAGTCCTAGTGGAACCACTCTACTCTATAATGGCTACATACACGAAGTGCACCCGTCCTCCTTCACCACCTACATTACAAAGAGCGAATTTCCATCGCAACATGCCCTGGCACCGTACGGGGTGCTGGAGGAACCTCCTCCCGCACCCGAATTCATCCCGCCGTCGCCGCCGCCCTACAAGAGGAAAAGCCTCTCGATGACCTTCACCTCAACAGGCGCCCACCTGAGCCTCCCGCCCAAGAAAAAGGACATCTACCGGCCGTACTGTTTGGACGAGGGCGGCAAAGCGGCAGTGATCGAGGAGCACCACTCGCCTCTCTCATTTCTCACCAACCAGCCCACCATCAGAGTGCCGGCAGAGGAGGATTTGCACGCGGCCCATGCCATTCTGGATCTGAGCGCCTCGACCACCGTCTTCCTCCCGGCACCCACGCCGCAGACAGTAGAACATCGCGACAACGACATCCAGGAACAGGAGAACATCCGGCCCCCGTCAATTGGCGTTAAGAGCGGAAAAACAGTGGCCTACACTTACGAGGCCTTCTTCGTCAGTGATGGCCGGTCGAAGAAGCGGCTGAATGCGGACGAAACGGTCGGCGCTCTCACCGCGAAGATCAGCAACGAGAAGCCAAAGTACACGTGCAGCGAATGTGGCAAACAGTACGCTACCAGTAGCAACCTGTCCAGGCACAAACAGACTCATCGGAGTCTGGATAGCCAGGCGGCGAAGAAGTGCATCACGTGTGGAAAGGCGTACGTGTCGATGCCAGCTCTGGCTATGCACGTGCTCACCCACAAGTTGGCCCACCGATGCGGCGTGTGCGGCAAACAGTTTTCCAGACCATGGCTGTTGCAAGGCCATCTGCGGTCTCACACAGGCGAAAAACCTTATGGTTGTGCTCATTGCGGCAAAGCCTTTGCTGACAGATCAAACTTGCGAGCTCACATGCAAACGCACTCGGCCGATAAGAACTTCGAGTGTCCGCGCTGCCATAAAACATTCGCTTTGAAATCGTACCTCAACAAGCACTTGGAGTCGGCGTGTCTCAAAGAGGAATCGACGTCGCCACTGTTGAACAGCCCGGACGACCAGAAGGAGGGAACGGAAAACCTGCCCAGCCCTGTTCCAGTGCGCCTCTACACAGGCTAA
Protein Sequence: MPRCLMAKKWKAYPWAEREPAKDPEEEEEIIDVVGDSQGACWGPSSPTEGATAPSPPPGSPSGTTLLYNGYIHEVHPSSFTTYITKSEFPSQHALAPYGVLEEPPPAPEFIPPSPPPYKRKSLSMTFTSTGAHLSLPPKKKDIYRPYCLDEGGKAAVIEEHHSPLSFLTNQPTIRVPAEEDLHAAHAILDLSASTTVFLPAPTPQTVEHRDNDIQEQENIRPPSIGVKSGKTVAYTYEAFFVSDGRSKKRLNADETVGALTAKISNEKPKYTCSECGKQYATSSNLSRHKQTHRSLDSQAAKKCITCGKAYVSMPALAMHVLTHKLAHRCGVCGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNFECPRCHKTFALKSYLNKHLESACLKEESTSPLLNSPDDQKEGTENLPSPVPVRLYTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00431691;
90% Identity: iTF_00431691;
80% Identity: iTF_00431691;