Dpon000914.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- -
- Assembly
- GCA_000355655.1
- Location
- NW:507244-518530[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-11 4.6e-08 31.9 0.0 1 39 201 240 201 244 0.90 2 4 6.3e-14 1.1e-10 40.3 0.1 1 39 255 293 255 296 0.95 3 4 2.2e-19 3.7e-16 57.8 0.0 1 45 310 355 310 355 0.98 4 4 3e-17 5.1e-14 50.9 0.0 1 39 362 401 362 405 0.94
Sequence Information
- Coding Sequence
- ATGCCTATAGGAAGCTTCCTGCCTCTTCCGGTCAACCCCGACAGCACATTCCCCTTTCCAGCCCTTAATGAGTACAAGAAGGAAAGTGGCCCTGGAACTGATCGCAACATGAGCGGTCATGGACTCATGGCAGGCCAGGCCATGTTTTCTCCCTTTGACACCGACGATTTCCCCCCAGAGCCGCCCGCGCCATCAGCCATCCCGGTTGGGCACGTCGATATGGACCACACGGCCACCATGCTAACAAATGTCCCCATTCATCGCACCGACCTATCGGATGCCACCACCAAATATGCGGCCGAAATCAAGAAGGAATCAGACGTCAAATTCGAGACGTTGCGGTCCTTCGAGCAGGACAGTCTGTTGGAGATGGACTCGCATATGAGTGGGGATCATTCGATCGGCTCGGAAGACCTTGGGGAGCTGCATCGATCCAACCTGATGAGCTCTGAGTACAATCCGCCGCTGCAAACGGGGATGCACAACAGGATAGAAGTGAGCGAGTGTGGGGATAATGGCGATCTATCGGGGCTGAAAACAAACGGCCACAGTGAGCACCAAAGCGCGCGAGCTCATAGCGGAGGTGGCCCGAAGACCTGGACGCAAGACGACATGGACATGGCACTCGACGCGTTGAAGAACCACAACATGAGCCTGACGAAGGCGTCAGCCACCTATGGGATCCCGTCAACGACTCTTTGGCAACGCGCCCACCGACTGGGGATCGACACGCCCAAAAAGGAGGGCCCCACTAAGTCCTGGACGGAAGAGAACCTCAACAACGCCTTGGAGGCCCTGCGCACGGGCACCATTTCGGCCAATAAGGCCAGCAAAGCTTATGGCATCCCGAGCAGCACTCTGTACAAAATAGCGAGACGAGAAGGTATAAGACTGGCCGCGCCTTTCAACGCAGCACCCACCACGTGGACGCCCGAAGACTTGGAAAAGGCGCTGGAGTCCATACGAACAGGTCAAACGTCCGTCCAAAAGGCTTCCACCGAGTTCGGGATCCCAACGGGGACGTTGTATGGGAGGTGCAAACGAGAGGGCATCGAACTTTCCCGATCCAATCCTACTCCCTGGTCGGAGGACGCTATGGGGGAGGCTCTGGAAGCAGTCAGATTAGGCCACATGTCCATCAATCAAGCAGCCATCCACTACAACTTGCCTTATTCGTCGCTATATGGTAGATTTAAGCGGGGGATTAAGTACGACTCAGACAACATAGAGGGGTTGTTTGGGCAGATCCAGCAGGAGAACGCGCAGCCCCAGCACATGGACCTGCACAGTTTCGCCGGCTTAGAGTACAGCAATGGGCAGCAAATCCAATACCAGAACCAGCCGAACAGCTGA
- Protein Sequence
- MPIGSFLPLPVNPDSTFPFPALNEYKKESGPGTDRNMSGHGLMAGQAMFSPFDTDDFPPEPPAPSAIPVGHVDMDHTATMLTNVPIHRTDLSDATTKYAAEIKKESDVKFETLRSFEQDSLLEMDSHMSGDHSIGSEDLGELHRSNLMSSEYNPPLQTGMHNRIEVSECGDNGDLSGLKTNGHSEHQSARAHSGGGPKTWTQDDMDMALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEGLFGQIQQENAQPQHMDLHSFAGLEYSNGQQIQYQNQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -