Dpon005743.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- JARID2
- Assembly
- GCA_000355655.1
- Location
- NW:205615-216290[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7 8.1e+03 -3.5 0.0 29 55 1056 1081 1041 1099 0.77 2 2 2.6e-21 4.4e-18 64.7 0.0 8 89 1701 1780 1696 1780 0.92
Sequence Information
- Coding Sequence
- ATGAAGAACTTGAAGAGAAAGCGGAAGGAAGCGTGTCCTTCGCCGATTCTGGATGACAGCCCCAAGAGAACGAAAGTTCAAGCGCAACGAAAATTTGCTCAGAACTCTGGACTACACAGTCCGATCATCAGTCCGATCCGCGACCTAGAAGCGGACGATCTTCCTGATACCAGCGCATCCCCCGAACCTGTGGAACTGCTGCCAATGAAGCGGCCCAATACCGAAGATTTCTTGACGTTCTTATGCTTCCGAGGAACCCCGATCTTATCGCCCTCCTTACAGTTCTTCAACACCGCTTCGATTGTGGCCGACGGTCAAGTGCACGAAATCAAAAGCGAGTCGCCGAAGAATGGGCCGATTGATATAGCAAAATGTGCAGGAAATTCGGAAAAACCGTTCATAGCATTCGGGGTAAGAAAGCGGGCGGATCCGATTGTGATTAGCAGACAAATGGAGAAGAAGAGAAGACACGCCCTGGCAATACAGGCTTTGCGAAGAAAGTACCAGGAacagaaaatggcaaaaatccgGGCCTTAACAATCAGCAAACTGAGCGAGAAAACCACCAACAAAACTCTGGTGAAAACCAACACGTTCCAGAAAACGGAAACAGTTACCAGGAAAACTAACACGCTGCAGAAAACGAAAGTGATTGCAACTAAACATGTGAAAGTCACCACCCAAACGCTGAACACGAAAGTGAAGCCGAAAATGTGTTTGAGGAGCTTCAGAGGCAAGTTTGTTCAAAAAGAGTTGCCCTTCCGGCAGCGAAAACTCTTGGCGGAGCGAGACTCTATCTCGCAACGACCAGTTGATATAAAAAAGGTGCTTAGAACGAGTAGGAACAGCAATAAGGGCTGTTCGACTGAAACCAGGCCACAAGCAACAACCGTTAAAAAGCTACCAGACCCAAAGCGAACTGGAGCCAGCGCTCAAATACCCAAACCGGAATTAAGCCCATCAGTTAGAGCTCCAATCGTATTTACGTCTTCAATAAAACGCACGCAAATGAAACGACGCATTTCACTGCCGTGCACAATAGTGAGCACCATCATACGGCCAAGGTTGAGGTCGAcaactgtaaaaaaatccgTAATTTCGAGGAAAAAGGCCCAACAACGAACCAGGACTAGCTTCAACAAAAGCAGCCGCCAAGACAAATCGATTGAGATTGCCAAGGAAAATACGTCTAAAAAACCCACCCACGAGAAAGTGGCCACCAAAAAAACGCCCCTGAATGGAACAGAAGCTACTGATTCACCACAATCGCCCAAAGCACCGGAAGTCTCAAAAAGAGTCACCAGAAGAGATTTCGATCTAGGCAAAAGTGACGTCCGAAAGGAAGTGGCGAAGAATTTCGAAATGACTAAGCAGGTGAAGATCGACCAATTGGggacaaaaaaaatgGTGAAGAAGAATCTGACGATGAAGAGGGACTTTAGCCTGAAGACCCAAACCAAAGACGTGAAGAAAAGGGTGGCTGTTCAAAAGACCGTTGACACTGTCTCGGAACGCAATGAGCTCGGCCAGAAAATCACGCGCGATGTTAAAACAGTGGAAACCACTATGGAAAAAGTGGTAACACGCAGATCAGAAGAGGCCAGAATTAGCAAAAGTCCTGCGCAAGAAGAAACAACcgtaaaagaaaatgtacaaaCTCCGAAGGAAGAAACTTCCAAAAGAAGATCGAGGAGCTCCATCAGTCAATCTGTTGATCTGCCTCCTGATGGAAAATCCCCAAAAACTCCCAGTACCGATGACGATATTGGCTTTGCTGGATTCAGCAGAACCTGCAAATCTTCGAACTTAAGCCCCATCCTGAAACTAGCGAGTTCCAAATTGCCAGAGAAAATCACCAAAGACTTACCATTAAACCAAGCAGTCCAAGACTCAGATAAAGTCCCTGATACTGAAAGTGATAAGGAAAGTTCGCGACGCATTACTAGGGACTATGGCTCCAGACTATCCGAACCAACAGCGAAGCGAAAAAGTCCAAATTCAACTAAAAAGCCACGGCCCGGTCCCTTCGACGTAAAAGTGCTGAAGGACTGTAAGAAAGAGCCGTCTTCCAAGAAATTAGACGACGagttttccaagaaaattcAACACATCATTGACAGTGCTTTAAAGGAAGTCCAGGACTTGAAACATCAACAGTCCAAAGTTTTGGACCAGACCTGTAAATCAGAGCATGACAAAAAAGAggacaatttaaaagcaattgcGAGTGGCAATTCTTCGGTAGAAACTCATACTCAGTCCTGTGGACAGCTACAGGAGAAGAAGGAACCATTAGGGGCTCTGCCGCAAGTCAAGGTGGAAACCGCGATGCCTGAAGCGCCAGTTGAGGTGCAAGTAAAACCCACTTCTGTGGATTTGATAGCAGCAAAAAAGCCCGATCAGCCCATGAAATTATCGAAAGTAAGACGCTTCACATCGAAGCCTGGAGAACCACTAAATGCTAAAAAGGTACACATTACTGCAGAGGATTCCGAAGTGTTTATGACCCAAAGTTCGCCAACTTATTCAGCTAAATCTCCCGAAAAAGAGCCATTGGAAGTGGCACAACCAGAAGAGTCAATGCAGGAAAAACCCGCAATTAAGAAAGCGAAAGCGGATCAGCCCACAATCGAACATTCGCAAAAACCTGCCAAAGAAGTTGCCTCAAATAAAGCAACGAGGCCCAACCTGTTACCAAAGAAAAGCTCTGATGAATACACGAAGAAAAAGGTGGTTTTAAGAAAAGAAGCATCTGAGCAATGCATTGCGATTGCCTCGTCGCGACCAAGCAGGAAAACTAAAGAAGCCGCAGCTATTTACATGGAAATTTTAAGCCACAAGCTCGTCAACGAAAGTATAATAGACGACGACATTTCCAGCGACAGTTTTCCCGAGTTGCCGAATGTTAAGAAAACTGAGCGACGGGAGAACGAGTTGAAAGCCCAAGCCAAAACCAGCAAAGAGGAAGAGAAAACTGCGAAAAAGCCCAGCAAACCTGAAGCAGTAGCTGTCGCTAAACCCACAACGTCTACTgacaaaactttcaaagccAAACCCGACAAAATGGAAACTGTGAAAAGTGAAGCTGCGGTTTTACCCTCTAAACCAACTGGGGCCAAAAAAAGGGCGACTCCTCTTACGATCGCATCGGATGACGATTCAGATAACGAGGTTTTGCTGGCCAAAGTCCGCAAGTGCGTAGTTCAGAGAACCGGAAAAACTGAAGATATTTCGAAGAATTGGCTGATAAGCGAGGAAAAGTCTTCGACTGAGCAAGAGACTGCGGCTAAACGGCCGATCAGGCGCTGCCTGCAAAACCTCAAGGAATCTGATACTGATTCATCGGACGAATCGTTTCACATTGACATCAGGGTGCCGCGGAAGAAGAAAAACACTCGAAGTCGAAATGTTCGAGCGGCTCCATCTCCAAGTTTTCTACAGCAAAGTGTCGACATCATCTTGCAGGCAGCTCGAGTTTTAGAAGAGAAGCCCTTGGAGGTTTTGCCTTCGACAGAATCAGTGAGCAAATCATGCGAAATTCCTGAAAGTTCTAAGAAGTGTGAACCTGCAAAGGAAGCCAAAGCCTTGATAAGCGATTCAGATGAGTCCACCACTTCGGATATTAATCTGAAAAGCCTGCAGGTGAGGCAAAGGAACAAAAAACTGTCGAAGAAAAACAACTCCAAGTCTTCCGCTAAATCCATCATCAGCTTCAGTGATTCTGATGAAGAGCCTTTGGCGAAGCTCACCACCAAAAGCATTCGATCCACTAATGACACCGAGGATTCAAAGAAGAAAGTGCACAAGCCCAAACCACCGAAAAAGACAATCACTAGATCGGAACTTATCACCGATTCTATCACAGTAATGGAGCCGAAGCCTAGGCGCGAATGTACTAAACGGCCCTCCAACTATCTTCCAATGCTGTCCAGTAGCGACGAAGACGAGTCGTATTTCCACGGTTTTAACACTGCCAAAGAGGACTTGAAGCCAACGGGCTTTGTTCAATCTTTGGCGCCATCGCTGGATCTGCTGAGCAAAGATATAGGCCGGAAAGAGAAGGTGAACATGTCCAATGAGCAAATTGAGCAGTGGCTGAAAGACTCTGCGCTGGCCAGTCGCAGTGTGGCGAAGGAAAACGACGAAATGTTGAAGTTCGGGGAAAAAATACCCACAGAAGTGGCAACCGGCGGCCAGATCGGTGTGCGTGTAAAACCCAGCGTTCCCGATCAGTTGAAATTGACTATTGCGAAACCGGAGCCGATTAGCAGTAAAATAGAGGCGACATTGCTCGGCGACAAGCCCAAAGTGAAGTCGCCACTAATGGACCGTAAGTGGATTTTCAAGAAGAACAAGAAGGAGTCAATGCCGAATAAGCAAGCGTTTTCTCCTGAAAATGAATGCAGTGTTTACGCGTTTGGGGAGGAGAATGAGGACATAGTTAGCACTCCCTTTAGACGGCCTACTAGAAGGCCGTCCAGTACGGCAACCTCACGGTCTGAAGACGAGCTGTCGAAGAACGACGACTCTTTAAAGCATGgtcAGTTCAGAAAGCCGAATCCATCAGACTCGGAAGATTCCCGGTGTTTTAACATACCCCAAAACCCTACAAAGCTGCCCAAAATTAACAAGTCGGAAAGCATGGTGCCGCCGTCGAATTACCACAGCAAAAGACAGACAAAAACCGGCGCAGAAAGATTTCCTGAGCCGTTTGATGATAGCAAATATAAAGTGCCCAGTTCGCCGAGCGCTAGCAGCGGTAGCAGcgcaaaactttccaaaaaaggCACCCAAAAGGCCAAAGGCAAAGCCTGGGAATCCATAAATCCTATCTATGTATCTGATTTTCCTAAACCAACCGATCCGGCCAAGCTGGTCGAAGCCCCAGTTTTTCATCCCACTGAGCAAGAGTTCCAAGATCCTTTAGAGTACATTGAGCGAATTCGACACAAGGCCGAGCAGTTTGggctttgcaaaattattccTCCAAGTTCCTTCAAGCCGGAATGTAAAGTTTCGGATGATATGCGATTTACCGCCTACAATCAGTATGTACATAAAATGCTTCATCGGTGGGGCCCCAACTTCAAGGAGTTCATAGCCATTCGGAAGTATTTGGCTacacaaagtatttttttgaaaactgccCCTTTGATCGGTGGCATGGAAGTTGATCTGCCGCGGTTATACCAAACCGTCCAAAGCCTTGGCGGTTTGAAAGAGGtgattgaaaagaaaaaatggtcGAAAGTGTCCGATCACATGAAAATCCCGAAATGCGCACAGGACCGCGTGACTAAGTTGGAtgatatttattgcaaataccTTTTGCCTTATGATACTTTGTCGCCAGcCGAACGTGAAAAACTGTTCGACGAAGTGGAAACGTACTGGGCGGAGAAGGATTCAAAGGCCACACAAGTGATTGCTGATGGAAAAGCGGAGCACAAATCCGAAGATTCGTTCGATCAAGAGGAATATTTTGACTCGGACGACATTGATACGGAAGAATGTACGTTGAAGGGCAAGAACATGGCGCTTAATGCTTTCTACCGGATTGCGCGCAATACAATGTCTATGTACTTTAAAGTGACCGATCCCACAGCGTCCGAAGTGGAGCAGGAATTTTGGCGGTACGTTACGCAGAAACAGAACCACATTTGCGTGCATGCAGCTTCAATAGACTGCGGCCTTTGGGGATATGGCTTTGCTGTGTCGAAAAACAGCCCTTTTGCGAAGCACCCTTGGAATCTGAAAGTCCTTTCTAATAACAACGGATCTGTCCTAAGATCGCTTGGACCGGTCATGGGAGTGACAGTTCCAACTCTTCACGTTGGCATGGTGTTCAGTGCGTGTTGCTGGTATCGCGATCCACACGGATTGCCCTGGATTGAATATTTACATACAGGCGGCAGCAAAGTCTGGTATGGAATTCCTAGTTCGTCATGTGAAGTCTTCCATGCGGCCATGCAGAAGTTGGTTCCAAACTACTGTCGTGCAAAAGAGCTCTGGCTTCCTTCCGATACTGCAATGGTTCCGCCCGGCATGTTGATGGAACACAATGTTTCCTTGTGCAGGACAATTCAAGAACCTGGCCAATTCATAGTAGTGTTTCCCAAAGTGTTCACCTCAAGCATTAGTACTGGTTATGTGGTATCAGAGAGTGTCTATTTTGCGCCTTTACACTGGCTGAAAACTGCTCGCAATTTGTTCAATGACTTAAAAAACAACTGCGAGCCGTCGATGTTCTCTTTGAACAAGCTTATTGTTCAAATAGCCAACGATAGTCGATCGAGTGTGGAAGTGTTAAGGGTAATCGTCCCATTCATAGAAGAGCTAGTGGCAAATGAGAATGAGAACCGACGAAAAATCAGAGCGTTAGCGCAAATAACGCAGGAACGAATGACATCCACTGAATCCTTGGCTAAAAAGAAACGGATACAAAATGTAGACGGTGATTTAGAATGTGAAGTTTGCCGAACGAATCTCTTCGTGTCCATGATTGTTGATACCCAAGAAGACTTAATTTACTGTCTAGAAGACGCTATAAAACTAGTGGAGCACAACAGCGAAATGGGGAAAAGGCTGAAATTGCGTTACTGCATGGACGAGTCGGAATTGACGAATATTTCAGTGAAAATCCACTCAGTGATCGAGGGGAAGCTTCAGAAAAAACTTACAAACAAACAGCCGTTATTGCCTAGTAATCCTTCCAAGTCACTTCTTTCCATATAG
- Protein Sequence
- MKNLKRKRKEACPSPILDDSPKRTKVQAQRKFAQNSGLHSPIISPIRDLEADDLPDTSASPEPVELLPMKRPNTEDFLTFLCFRGTPILSPSLQFFNTASIVADGQVHEIKSESPKNGPIDIAKCAGNSEKPFIAFGVRKRADPIVISRQMEKKRRHALAIQALRRKYQEQKMAKIRALTISKLSEKTTNKTLVKTNTFQKTETVTRKTNTLQKTKVIATKHVKVTTQTLNTKVKPKMCLRSFRGKFVQKELPFRQRKLLAERDSISQRPVDIKKVLRTSRNSNKGCSTETRPQATTVKKLPDPKRTGASAQIPKPELSPSVRAPIVFTSSIKRTQMKRRISLPCTIVSTIIRPRLRSTTVKKSVISRKKAQQRTRTSFNKSSRQDKSIEIAKENTSKKPTHEKVATKKTPLNGTEATDSPQSPKAPEVSKRVTRRDFDLGKSDVRKEVAKNFEMTKQVKIDQLGTKKMVKKNLTMKRDFSLKTQTKDVKKRVAVQKTVDTVSERNELGQKITRDVKTVETTMEKVVTRRSEEARISKSPAQEETTVKENVQTPKEETSKRRSRSSISQSVDLPPDGKSPKTPSTDDDIGFAGFSRTCKSSNLSPILKLASSKLPEKITKDLPLNQAVQDSDKVPDTESDKESSRRITRDYGSRLSEPTAKRKSPNSTKKPRPGPFDVKVLKDCKKEPSSKKLDDEFSKKIQHIIDSALKEVQDLKHQQSKVLDQTCKSEHDKKEDNLKAIASGNSSVETHTQSCGQLQEKKEPLGALPQVKVETAMPEAPVEVQVKPTSVDLIAAKKPDQPMKLSKVRRFTSKPGEPLNAKKVHITAEDSEVFMTQSSPTYSAKSPEKEPLEVAQPEESMQEKPAIKKAKADQPTIEHSQKPAKEVASNKATRPNLLPKKSSDEYTKKKVVLRKEASEQCIAIASSRPSRKTKEAAAIYMEILSHKLVNESIIDDDISSDSFPELPNVKKTERRENELKAQAKTSKEEEKTAKKPSKPEAVAVAKPTTSTDKTFKAKPDKMETVKSEAAVLPSKPTGAKKRATPLTIASDDDSDNEVLLAKVRKCVVQRTGKTEDISKNWLISEEKSSTEQETAAKRPIRRCLQNLKESDTDSSDESFHIDIRVPRKKKNTRSRNVRAAPSPSFLQQSVDIILQAARVLEEKPLEVLPSTESVSKSCEIPESSKKCEPAKEAKALISDSDESTTSDINLKSLQVRQRNKKLSKKNNSKSSAKSIISFSDSDEEPLAKLTTKSIRSTNDTEDSKKKVHKPKPPKKTITRSELITDSITVMEPKPRRECTKRPSNYLPMLSSSDEDESYFHGFNTAKEDLKPTGFVQSLAPSLDLLSKDIGRKEKVNMSNEQIEQWLKDSALASRSVAKENDEMLKFGEKIPTEVATGGQIGVRVKPSVPDQLKLTIAKPEPISSKIEATLLGDKPKVKSPLMDRKWIFKKNKKESMPNKQAFSPENECSVYAFGEENEDIVSTPFRRPTRRPSSTATSRSEDELSKNDDSLKHGQFRKPNPSDSEDSRCFNIPQNPTKLPKINKSESMVPPSNYHSKRQTKTGAERFPEPFDDSKYKVPSSPSASSGSSAKLSKKGTQKAKGKAWESINPIYVSDFPKPTDPAKLVEAPVFHPTEQEFQDPLEYIERIRHKAEQFGLCKIIPPSSFKPECKVSDDMRFTAYNQYVHKMLHRWGPNFKEFIAIRKYLATQSIFLKTAPLIGGMEVDLPRLYQTVQSLGGLKEVIEKKKWSKVSDHMKIPKCAQDRVTKLDDIYCKYLLPYDTLSPAEREKLFDEVETYWAEKDSKATQVIADGKAEHKSEDSFDQEEYFDSDDIDTEECTLKGKNMALNAFYRIARNTMSMYFKVTDPTASEVEQEFWRYVTQKQNHICVHAASIDCGLWGYGFAVSKNSPFAKHPWNLKVLSNNNGSVLRSLGPVMGVTVPTLHVGMVFSACCWYRDPHGLPWIEYLHTGGSKVWYGIPSSSCEVFHAAMQKLVPNYCRAKELWLPSDTAMVPPGMLMEHNVSLCRTIQEPGQFIVVFPKVFTSSISTGYVVSESVYFAPLHWLKTARNLFNDLKNNCEPSMFSLNKLIVQIANDSRSSVEVLRVIVPFIEELVANENENRRKIRALAQITQERMTSTESLAKKKRIQNVDGDLECEVCRTNLFVSMIVDTQEDLIYCLEDAIKLVEHNSEMGKRLKLRYCMDESELTNISVKIHSVIEGKLQKKLTNKQPLLPSNPSKSLLSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -