Dpas002402.1
Basic Information
- Insect
- Delias pasithoe
- Gene Symbol
- -
- Assembly
- GCA_010014985.1
- Location
- JAAAKR010000767.1:13897844-13918162[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.25 45 6.3 4.2 3 19 243 259 241 260 0.95 2 12 4.9 8.9e+02 2.2 1.4 1 21 281 301 281 304 0.80 3 12 0.021 3.8 9.6 0.6 2 23 366 389 365 389 0.96 4 12 0.84 1.5e+02 4.6 4.7 2 23 888 909 888 909 0.91 5 12 0.26 47 6.2 2.2 1 23 957 978 957 978 0.96 6 12 1.7 3e+02 3.6 3.1 2 23 1031 1052 1031 1052 0.94 7 12 1.4e-05 0.0026 19.6 0.2 2 23 1068 1089 1067 1089 0.97 8 12 2.7e-06 0.00048 21.9 3.1 1 23 1095 1117 1095 1117 0.99 9 12 0.0019 0.35 12.9 2.2 2 23 1123 1144 1122 1144 0.94 10 12 0.0001 0.018 16.9 2.1 2 23 1151 1173 1150 1173 0.95 11 12 1.6 2.9e+02 3.7 0.2 1 20 1180 1199 1180 1199 0.85 12 12 0.011 1.9 10.6 1.2 3 23 1212 1233 1211 1233 0.93
Sequence Information
- Coding Sequence
- ATGGATAATGGAGGAAGAAAATCAAGAAAAACTAAACTCGTTCCACGTGAAATTATCGACTCGGACGAAGAAATTATTGCATTGCAGAATGAGGTGGAAAACACTCTTGCAAATATGAAAGGAATTAAAACTGCGTTCCCAGGAAAATCTCAATCAATTCAACCCCAGCCAATTCCAACATGTAATTCTAAAAGAAGAGATAGTTCGACTATAGTTAAGAATGTTATAGGAATAGATTTTGATATAAAGGTGGAAGTGGAAAATGTTGACGACAAAAAAAGAAGTTTAGAAATTTGTTATAAGGATGTTATAAAAGAGTCGACTAATATTGTCAACAGAACAGAGAATGTGTTcgataaaatttttcatattcagGTATTGAATACATGTAAACCcaatctgaaaatatttgtcCAATCTCGACAGGATAAACTATTGGACAAAGTGCTCCTCCGATGGCGGGACTGGGCGAGTATAACCGAGGAGCCGAAGGATTCACCGCTATGCTACAAATGCTACATATGCAAATTGGCATGGTGGCATTTGAGCCCATTCCGTGAACACATACAGACACACAACAATCTACACATCTCGCTGGAGATGAACGATTACGTCGAGTGTAATATTGTtgcgtatattaaaaaaatgccaaaCACATTCATCAATATGAAAGGCAAATGCTGGAAGTGTGGCAAGACCGCCACTAAACACACAACACCGAAGCACTGTTCCGGCTGCAACAAGCGCTTCTACAcctgtataaaattaagacAGCACGAGTGGTACTGCcgccaatttaaaaataaacacccGGAGAAGTTCGCCAGCGCGCGGAAGGTGTACAAGTGTCACCTCTGTCGGTTCTACTTCTTCAACGTGAGCGACAGCGTGGAGCATATGGTGTTGGCGCATTCGGTGCGTTCGGACGTGCCAATACCTGGCTATTGCGTGTGTGAACATTGCAACGGTTTAATTGCGTATGATGATGATCACGTGTGTGAATCTGATGTGTATATTGAAACGTGCGGTGTGTGTATGAAGCATCTGACTGCGAACACTGCAGCGTTCCATCAGTTGGACATCGGAAAGCACGTTAAGTGTCCTgaagtAAAATGCAATGTTAAATTCTCGCAGCCTTGCATGTTGATGGAACATGGTCTGCGTCACACCACTAACTATTGCAAAGCATATAAATGCCTGagttgcaatatttttatgatcttCGACCCGGAGAGGAAGAAGGACCACCAGCTGGCATACCATAGCAGAACCGATTTTGAATTTGATCATatttatgtcccaaaaacaataattgataaattaaaacaattggaCGCCGTTAGATACAATTGCTTTAGTGATGAAAAGCATGAGTACAAAACAGATGTTAATTCTGAGAAATTGATAagcaatgataaaataatagaagaaaataacaaGGACGAAGATGAcgatgtaattattattgataccGTACCAGATGTCGTTGACATTCCATCTGATGACGCACCTGACGAACTGCCTTCCGTCGTTGAAATTAAATCAGAACCGATTACTGATGGAATTGAAGATAGATTAATgagtagtaaaaatataagaaagcaTGTCATTAATGTACCAATACTCAAGCCTGAAAATTTGATGTCAAACGAAGAGAACGAAAGAGAATTGAATAAGAAAGAAGTAACCGCGgctgtaaattttattctcgGCATTCCGCCTATATCTGAAAATAGTATTAGCATCAACCTAAATGATTTACTATGCGAAAGAACGACACACGAAGGAAAATTTCtcttaataaattctaatagcTTGGATgcgttaaatgaaaataaaaaaacactcgaGGGTGTATCGTCATACGAAAGAACAAATCGAACGCTAACTGAAAAGGTGACATCGGAAGGCACATTTCTTACGGTGAAGAGAAACTCTAAGAAACGGAGAGTAAATCAAACGAAAAGTGTAAGAAAACAATCAGACAAGATGAATTACAAGCACGCGTTgtcgaatattaaaaaatcaatggaATTGACATATAAGGAATTGGAATCTCTTTCGAAAACATCTAAGAGAGTAGAAAGTGAACatgttaatatgaatataggAGTGAAAGTAAAAGAGGAAGATCGACATGTAATAGAATACAGTACTGATACAGAGAAAATAAAGCAAACTGACGGCAAACAAAAAGAAGAATGTAACATGGCAATTGTTGAAGATTGCAATGTTAACCTAAACAAAAACAGAGAAAATGAACAATCTGATACACAGATTAGACACGAAACCGACGGTGACCCAAAACAAATTGAAGATATAGAAATTGACGTACCGTTAGAGTGTGTTATAATAAAGCAAGAATCGGATTCGGAAATGGATATAACACTGtcggatattaaaaaactatacaatgCGAATTTAATAACGCAAGGGGATAATGAATTGAATAAGAATGATTTGGCTAATCAAAGGGAAAACTGGACTATTGTAGATACCTCTGCTTCCTATatacATGATACGACTGATGAAGAGTACGAAAACGAAATGGTCATTGATTCGCAATACGATGATGATgctgattataattataggaACAAGAAACTGAGAAGGTACCACAAGGTAAACGATTGCAAATATACAACGAGAATCACGAGGAACTACTGCTCCCACTGCAATAAATACTTCGATTCCATGCATCTGTATCTGAAGCACTTCGAAGACCACAAGCTACCGCGATTCGCCTGTCCCGAGTGCAGGGAACTGTCGCAATCGGCCTCGGGGATGATGTTCCACGTGAGATGGCATTTGAGCAATTTATTCGTACCGTATTTTGCGCTGAACAATGCGCAGACTAAGAAGAGAACTTTTCGctGCGGAAAATGTGATAAGGAAGTGCAGAAGATACATTTCTTAAAACACTGGGACTCTCATCTTGACTTGAGAGAATTCGCTAAGCCGCTTAAAACAGAACCAACAGTTGATGATAAGTGTAACATGACGAAAACTACAAATACAGATATTAATGAAGTGATAAacTTGTTCTCGAATCCGACCAAGTTAATGGATGTTAATAGGGACTCGTTTCGCGTGTGCGCGCTGTGCACGCGCCGGTTTCAGCGGCGGAACGATTGCAAACGGCACCTGATCGAGCATTTGCTACAGAATGCGTACACCAACCGGAGTGAGTGTAAGGGCCTCAAGTGTCAGTTATGCGGCGCGGTGTTCCCGAAACCCGACCAATTCCGTGCCCACATGCGCCAACACGCCTGCCTCCCGGTGTACAAGTGCGAGCTGTGCAACAGAACGTTCAGTGATTCGAGCAATTTCTCCAAGCACAAGAAGGTGCACAATTACCAAACCTTGATCTGCGATGTGTGCAAGAAGAAATTCCACAGCAGGAACTATCTCATTCGTCACCTGACGGAGCACGAAAAGTTGCCGCCAATAAAATGCAACGAGtgtgatagaatattttattcccAATCACTGTACAACAGGCACCATAAGCTCGTGCACGCCAAGGTCAGCAGCTCGTTCAAATGTTACGAGTGCGGGCTGGAGTATCGCGCGCTGAAGCAAAAGTGGGACCACATGTGGGAGGTGCACAAAGAACGTGCGTTTGAAGCCGATTGCATGATGTGTGATGCGAAATTTCGCAAGAGGATGGACTTGAAACGTCACTACTTCAGTGTGCACGACGTCATTAACGTGTCGTTTCCGAGACGTAACAAGAGGGTTGTTATCACGTTTACACTAGATTGCTTACAATTCGCGCTAGACCCGAACAAACATGAACACTGTACACTAGATGTCGAGAAATCCGGTGAAGCGCGGGTGAATGTCGTCGGCTTCTCGAGAGCGGCGAGCAGCGCGCGCCAATCGCCCGCCATCGCACCATACACACGACAGCACCACAGCGTCGCCACTTAA
- Protein Sequence
- MDNGGRKSRKTKLVPREIIDSDEEIIALQNEVENTLANMKGIKTAFPGKSQSIQPQPIPTCNSKRRDSSTIVKNVIGIDFDIKVEVENVDDKKRSLEICYKDVIKESTNIVNRTENVFDKIFHIQVLNTCKPNLKIFVQSRQDKLLDKVLLRWRDWASITEEPKDSPLCYKCYICKLAWWHLSPFREHIQTHNNLHISLEMNDYVECNIVAYIKKMPNTFINMKGKCWKCGKTATKHTTPKHCSGCNKRFYTCIKLRQHEWYCRQFKNKHPEKFASARKVYKCHLCRFYFFNVSDSVEHMVLAHSVRSDVPIPGYCVCEHCNGLIAYDDDHVCESDVYIETCGVCMKHLTANTAAFHQLDIGKHVKCPEVKCNVKFSQPCMLMEHGLRHTTNYCKAYKCLSCNIFMIFDPERKKDHQLAYHSRTDFEFDHIYVPKTIIDKLKQLDAVRYNCFSDEKHEYKTDVNSEKLISNDKIIEENNKDEDDDVIIIDTVPDVVDIPSDDAPDELPSVVEIKSEPITDGIEDRLMSSKNIRKHVINVPILKPENLMSNEENERELNKKEVTAAVNFILGIPPISENSISINLNDLLCERTTHEGKFLLINSNSLDALNENKKTLEGVSSYERTNRTLTEKVTSEGTFLTVKRNSKKRRVNQTKSVRKQSDKMNYKHALSNIKKSMELTYKELESLSKTSKRVESEHVNMNIGVKVKEEDRHVIEYSTDTEKIKQTDGKQKEECNMAIVEDCNVNLNKNRENEQSDTQIRHETDGDPKQIEDIEIDVPLECVIIKQESDSEMDITLSDIKKLYNANLITQGDNELNKNDLANQRENWTIVDTSASYIHDTTDEEYENEMVIDSQYDDDADYNYRNKKLRRYHKVNDCKYTTRITRNYCSHCNKYFDSMHLYLKHFEDHKLPRFACPECRELSQSASGMMFHVRWHLSNLFVPYFALNNAQTKKRTFRCGKCDKEVQKIHFLKHWDSHLDLREFAKPLKTEPTVDDKCNMTKTTNTDINEVINLFSNPTKLMDVNRDSFRVCALCTRRFQRRNDCKRHLIEHLLQNAYTNRSECKGLKCQLCGAVFPKPDQFRAHMRQHACLPVYKCELCNRTFSDSSNFSKHKKVHNYQTLICDVCKKKFHSRNYLIRHLTEHEKLPPIKCNECDRIFYSQSLYNRHHKLVHAKVSSSFKCYECGLEYRALKQKWDHMWEVHKERAFEADCMMCDAKFRKRMDLKRHYFSVHDVINVSFPRRNKRVVITFTLDCLQFALDPNKHEHCTLDVEKSGEARVNVVGFSRAASSARQSPAIAPYTRQHHSVAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -