Dpas048277.1
Basic Information
- Insect
- Delias pasithoe
- Gene Symbol
- -
- Assembly
- GCA_010014985.1
- Location
- JAAAKR010002049.1:8261-11755[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.02 3.6 9.7 0.3 1 23 259 281 259 281 0.95 2 12 0.01 1.9 10.6 2.4 3 23 308 328 307 328 0.95 3 12 0.00021 0.039 15.9 0.3 2 23 334 355 333 355 0.97 4 12 5.2e-05 0.0095 17.8 1.5 1 23 359 381 359 382 0.96 5 12 0.041 7.4 8.7 0.1 3 23 387 408 386 408 0.95 6 12 0.4 73 5.6 0.6 3 23 413 433 411 433 0.95 7 12 0.026 4.8 9.3 0.7 5 23 496 514 493 514 0.91 8 12 0.081 15 7.8 0.1 3 23 535 556 533 556 0.95 9 12 5.4e-06 0.00099 20.9 3.6 1 23 562 584 562 584 0.98 10 12 0.00045 0.081 14.9 1.3 1 23 589 611 589 611 0.97 11 12 0.00033 0.06 15.3 4.9 2 23 618 640 617 640 0.96 12 12 0.0086 1.6 10.8 2.0 3 19 679 695 677 700 0.94
Sequence Information
- Coding Sequence
- ATGGAGCCAGCAATGCTTACAGAACATCCTTACCCAACTCTGTACATCCCACGATGGTGTTCTACATTGGAACACGAATTCGAGTCCTCGCATAATTTGTTCGTTAACGTAAATATTGTTGCTAATGACACAGACGGCCGACAAGTAACAATCTACAACGGTTTTTTGGACCTCAAGATCATTGATAGCAATGAGATCCCATCCGATCCTATACTTCTGCAAAATCAATTAGTACCTGAAAAATCTGATAGctactatttaaatacttatgaTGATAGAACATGGATAAACCTCGACCAGAACCAGTATCAGGAAACTCAGTTTTCGTATTTATCCGGTGATCAATTGGAAGAAATTACTTACGAAGCACCCGCGCAAAGTAGCCAAAATGAAGAAACATTATTCCTCCATAAAAAGTTTAGAAAATCTATTAGCAGAGATAGAGAAGAGAATGAGAAATATGATGAAAATTCACTTAGTGAAAATCATGATACATTATTACTCTCAGAGTACAAACACAGTACAGATCGTGTCGAAATTATGGGTAACTATTATGAAAACAAGATATCACCCCTAAAAAGAAAAGTGCCTCTAAAAGAAAGCATTGCTATAGTAGAAAATTGTGCTTTAAAGCAATTAATGTCAGATTTCAACTTACCCAAAGAAAAGAAGATAATTGTATTCGGAGAAGAGAGTGATAATGACCAGACCatctttcaaattgaaaatacagACTCAATTTCAATTAGTTCTATGCTTAACACAAAGAAGCTGTACCAGTGCCAAGCCTGCAATGAGGTATTCATCGATATAAAATCCTTCCGTGAGCACTCTACCATCCACACAAATGCTCATTCAACGATCTCCACTATTGTGCCTAAGAATGAAAGTTTTCAAATGACCACCGATAAGATAAACTTCTGTTCAACGTGCAACAGaagtttcaaaaatatgaacaaataTAAGCAACATGTTTTggGTCACAGCAACCCCGACGTCGAGTGCCCTAAATGTTTCAAAGTGCTGGCTTCGAGGTATACGCTCCGTATGCACATGATGTTGCACAACAGAAAGTATTCCTGCCCGAAATGCACCATGACTTACAACAGCGAAGAAGCGCTGAAGCGGCACCTCGAGAGCCACCACGAGAGGAAGGCGTGCTCTCTGTGCGGCCAGCTCTTCAAGTCCGAAGCGATGCTCGACGCGCACAAATCCAAATGGCACGGCATCATCGCCTGCAAGATCTGCAACATACAGCTGTACTCGCATAACGAATACTTAAGTCATCTGAAAGGTCACGCCCGTCAAAAGTTCAGTTCAGAGGATGAAGACAATTCTGTCGAATTCAAAGCTATCACCTCTACGCTGCCCAGCAGTTTTGATTCATACGACAGCGCTGATCCCCAAACGCCGGAtcctaatgaaaatattttttcgctTCAGCGCAAGAACACATCTAAGAAAGGAACGCCACGgGTATGCATCGTGTGCAAGAAGAAGTTCGACAGGACGAACGACATGAAACGTCATCTCATCGAGCACGTGCTCAAGCGGAGCCTCACCAACAACCCGGTGAACATCGACGGCAGCCTGTGCCTGCTGTGCGACGTGTGCGGCGAAGCCTCCTTCAGCAAGACCGAGGCGTACAAGGCCCACCTGCGCGAACACGCCAACCTGACCATCTACAAGTGTCTCCTATGCAACAAATCCTTCAGCGACTCCAGCAACTTCTCGAAGCACAAGAAGCTCCACGGCAAATCGCGCTATGAGTGCGACATGTGCAACAGAAAGTTCAATTCGAAGAAAACCATCTCCATGCACATGGAGCTGCATACAAAGACTCCACCGTTAACTTGCTTCAAGTGCAACAAGAAGTTCCACTTCCCTTCCATGCTCAACCGACACATCAAGAGTAAACACATCAAGGCTAAGTACCAGGTCAGCTGCAGGCTCTGCCCGTCCATTTTCAACTCGGTGAAGGAGAAGTGGGACCACGAGTGGAATCTGCACAAAATTAGGAATCACGTATTAGACTGTTTGGTGTGCGATAAGAAATTCAGGAAGTATGTTGACCTCAAGCGACACTGCTACGAAGTACATCATATCGTTCTACCCCGCTTCCGGAACTACACCAAAAGCTGA
- Protein Sequence
- MEPAMLTEHPYPTLYIPRWCSTLEHEFESSHNLFVNVNIVANDTDGRQVTIYNGFLDLKIIDSNEIPSDPILLQNQLVPEKSDSYYLNTYDDRTWINLDQNQYQETQFSYLSGDQLEEITYEAPAQSSQNEETLFLHKKFRKSISRDREENEKYDENSLSENHDTLLLSEYKHSTDRVEIMGNYYENKISPLKRKVPLKESIAIVENCALKQLMSDFNLPKEKKIIVFGEESDNDQTIFQIENTDSISISSMLNTKKLYQCQACNEVFIDIKSFREHSTIHTNAHSTISTIVPKNESFQMTTDKINFCSTCNRSFKNMNKYKQHVLGHSNPDVECPKCFKVLASRYTLRMHMMLHNRKYSCPKCTMTYNSEEALKRHLESHHERKACSLCGQLFKSEAMLDAHKSKWHGIIACKICNIQLYSHNEYLSHLKGHARQKFSSEDEDNSVEFKAITSTLPSSFDSYDSADPQTPDPNENIFSLQRKNTSKKGTPRVCIVCKKKFDRTNDMKRHLIEHVLKRSLTNNPVNIDGSLCLLCDVCGEASFSKTEAYKAHLREHANLTIYKCLLCNKSFSDSSNFSKHKKLHGKSRYECDMCNRKFNSKKTISMHMELHTKTPPLTCFKCNKKFHFPSMLNRHIKSKHIKAKYQVSCRLCPSIFNSVKEKWDHEWNLHKIRNHVLDCLVCDKKFRKYVDLKRHCYEVHHIVLPRFRNYTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -