Dpas044667.1
Basic Information
- Insect
- Delias pasithoe
- Gene Symbol
- -
- Assembly
- GCA_010014985.1
- Location
- JAAAKR010000395.1:6385-15438[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00014 0.025 16.5 1.3 1 23 396 418 396 418 0.98 2 10 2.4e-06 0.00044 22.0 1.9 1 23 424 446 424 446 0.99 3 10 1.1e-05 0.002 19.9 4.5 1 23 453 475 453 475 0.98 4 10 1.1e-05 0.002 20.0 0.2 1 23 481 503 481 503 0.93 5 10 2.8e-05 0.0052 18.6 0.1 1 23 509 531 509 531 0.95 6 10 1.8e-05 0.0033 19.3 2.3 1 23 537 560 537 560 0.96 7 10 0.00016 0.03 16.3 7.5 1 23 566 589 566 589 0.97 8 10 5.9e-06 0.0011 20.8 0.9 2 23 596 617 595 617 0.97 9 10 0.00014 0.025 16.5 0.4 1 23 623 645 623 645 0.96 10 10 0.0026 0.48 12.5 0.2 1 23 651 675 651 675 0.92
Sequence Information
- Coding Sequence
- ATGGCAAAGTATTGCTACATCTGCAACAAGCTAGATGGTGGTGTGGGCAAAACTCAAGctaaaatatttgacataCAGactccaatatcaaataaaaagattcATGAGCTACTATTTGATATATCAGGAACTGTAGTGCGAGATGAAAGTAAAGCGAAAAACAGCTTGTGTGCAAAATGCTATAAGACAATACTggaatatgattatttattggcTAGATTAAATGAGATAAGGACAGATATTCATGACAATATTAGTCAAGCAGAGGAAATTCGATCAACAggagaaaaaataaagaaagaagtTCAAAGTAATACTGTAGacagtgataaaaaattagaaccttgtttgaagaagaaaattcAACTGGTAGTTCCtgcttcaaaattaaaaccacTTCCACCtggttttaatttgaaatggaATAAGGGCCTGGAAACAaccaatactaataaaatggaaaaatattcaatgcaAATTGAGTCATCTCaagaaaatacaattcaaaatatGGCATATGAAGTaccaataattatttctgatgAAATAACATCctttttgaacaaaaaacaattaagtttaaatgattttgttgttgttaaaGAAGATGACAATAATATTGATGACCGACCCATGGAGATTGATGAAGatgcaGTCATAATGGAAGCAGAAAACGGTCTACTTAGTGTAGTGTCTAATTCcaattttttgtatggtaacTCCGAAATATCACTGGTTATGCCTCGCGCGAATATCTCTAATCAGAATGACGATGCACATGATTCAAATTATGAATCACACATAGAGTTGCAAGTGTCTGGGGATGAAGAAACTGCAAAAGCAATAATGGCCGCCGCTAATGAGCGAGGTGGCACCTTCATCAAAGTCGGCGACGGTGAAATGTATGAAGTGAAATCTGTTGAAAGCAAAGTGGAGTACGCTCCGACCCTTGAGGATCCTTTACGGTTGGACGAAAATATGGTAGAGGCTGTTGAAAATGCCGAAACCGTGGTAGGCGAAGCAGATTGGATGATGTATCATTTGAAGTCTGTTCACTCCGCTCGGCTGTATTTATGTAACTGTGGTgctattataagaaaaagagTCGATTTTACCGCACATGTGGaaCAACACGCGAATTCAAACAGTCTAAGCCCACAGACTGCTGAAAAAATTAGCAAGCTACACGAGTGCGGTGTTTGCAAGAAGAAATTCAGTTCCCGTACGGTGCTGGCTGGCCACATGAATACGCACACGGGCGCGCGGCCCTACACGTGCGAGCTCTGCGATCGCTCCTTCTCCTCGCGGTATACGCAGCAGGCACATATGAAGACACACACGgACCGCCCTCGTCCATACAAATGCAATCAGTGTGGGAAAGCGTTTTTCACGCCGCATACTCTCCAACATCACGAAAAGATACATACCGGCACTAAGGACTTTGTCTGCAAAGTATGTGGAAAGGCGTTCGGCTCACAACACAACCTGGAAGTGCATGGGGTGGTCCATACTGGGATAAAGCCTTTCCTATGTTCGATTTGCAACAAAGGCTTCGCTCGGCGCGCTGAGGTCCGAGACCATATACGGATACACACcgGTGAACGTCCGTTCGAATGTGAAACGTGTGGAGCGAAGTTCTCGCAAAGATCGAATCTTCACTCGCACAAAAGAGCCACCCATCTTCAAGATAAACGACACGAATGCCCGCACTGCCCGAAACGGTTTAAGCGACGTCGtcTACTGGAGTACCACTTAAAGTCGTGTCACACGGGCGAGAGGCCGTTGCAGTGCGAAGTGTGTAACGCCACCTTTATATATCCCGAACATTATAAGAAACACATGCGCATACATACCGGCGAGAAGCCATTTATTTGTGAgGTGTGCGGTAAGGGATTCAATTCCCGAGACAACAGAAACGTGCATCGGTTCATTCACAGCGATCGAAAGCCGTACGAGTGCGTTCTGTGCGGCGCCGGTTATATGAGGAAGAACCAACTCTACCAACACATGAATTCAACGGGTCACCTGTCGGAGTCTATAGTTATTAATCAACCGAAAGTCACGCAGGTCGAGGACGAGgAGTCTAAAATACAATCGTTTATCATAACTGAGGAAAATGATGATTCTAATGATTCTAAAATACTAGAGAcgGTGTACGAAGCCAGGGAAATACAAGTTTTAGCAAATACTGATAAAGTTGGAACCAAATCTGTTGAACTAGTTCAAGAGAACGAAGCAGAAGGCCAAGAATGTGATTTAATAGCTATACATAACATTGagacaacacaaataaatggGACCATTCTAGATAACCTCACAACCGAACAACTGGAACAGGCTCATATACTAAGTGACGGCGATAACACTGTACgtttaattcaaattcaacTCGCAGACGGCGGTGCTGGCTGGGTAGCGGTCAGCCAGTAg
- Protein Sequence
- MAKYCYICNKLDGGVGKTQAKIFDIQTPISNKKIHELLFDISGTVVRDESKAKNSLCAKCYKTILEYDYLLARLNEIRTDIHDNISQAEEIRSTGEKIKKEVQSNTVDSDKKLEPCLKKKIQLVVPASKLKPLPPGFNLKWNKGLETTNTNKMEKYSMQIESSQENTIQNMAYEVPIIISDEITSFLNKKQLSLNDFVVVKEDDNNIDDRPMEIDEDAVIMEAENGLLSVVSNSNFLYGNSEISLVMPRANISNQNDDAHDSNYESHIELQVSGDEETAKAIMAAANERGGTFIKVGDGEMYEVKSVESKVEYAPTLEDPLRLDENMVEAVENAETVVGEADWMMYHLKSVHSARLYLCNCGAIIRKRVDFTAHVEQHANSNSLSPQTAEKISKLHECGVCKKKFSSRTVLAGHMNTHTGARPYTCELCDRSFSSRYTQQAHMKTHTDRPRPYKCNQCGKAFFTPHTLQHHEKIHTGTKDFVCKVCGKAFGSQHNLEVHGVVHTGIKPFLCSICNKGFARRAEVRDHIRIHTGERPFECETCGAKFSQRSNLHSHKRATHLQDKRHECPHCPKRFKRRRLLEYHLKSCHTGERPLQCEVCNATFIYPEHYKKHMRIHTGEKPFICEVCGKGFNSRDNRNVHRFIHSDRKPYECVLCGAGYMRKNQLYQHMNSTGHLSESIVINQPKVTQVEDEESKIQSFIITEENDDSNDSKILETVYEAREIQVLANTDKVGTKSVELVQENEAEGQECDLIAIHNIETTQINGTILDNLTTEQLEQAHILSDGDNTVRLIQIQLADGGAGWVAVSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -