Dpas007475.1
Basic Information
- Insect
- Delias pasithoe
- Gene Symbol
- -
- Assembly
- GCA_010014985.1
- Location
- JAAAKR010000767.1:47118021-47120050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0013 0.24 13.4 5.0 2 23 38 59 37 59 0.96 2 16 0.00099 0.18 13.8 4.2 3 23 65 85 64 85 0.97 3 16 0.00018 0.032 16.2 1.0 2 23 91 113 90 113 0.91 4 16 5e-05 0.009 17.9 1.9 1 23 119 142 119 142 0.97 5 16 0.00077 0.14 14.1 0.8 1 23 148 171 148 171 0.96 6 16 9.4e-05 0.017 17.0 0.3 1 23 177 199 177 199 0.95 7 16 4.1e-06 0.00074 21.3 1.2 1 23 205 227 205 227 0.99 8 16 0.06 11 8.2 0.0 2 23 354 375 353 375 0.96 9 16 0.082 15 7.8 6.7 1 23 397 419 397 419 0.95 10 16 0.0038 0.69 12.0 0.1 1 23 423 445 423 445 0.96 11 16 0.0025 0.45 12.6 0.1 1 23 450 473 450 473 0.95 12 16 2e-05 0.0037 19.1 1.5 1 23 479 502 479 502 0.98 13 16 0.0038 0.69 12.0 0.9 1 23 509 532 509 532 0.97 14 16 0.018 3.3 9.8 2.7 1 23 538 560 538 560 0.94 15 16 5.8e-07 0.00011 24.0 1.0 1 23 566 588 566 588 0.99 16 16 6.5e-07 0.00012 23.8 2.6 1 23 594 616 594 617 0.96
Sequence Information
- Coding Sequence
- ATGAGTGACTTGGACACTTTAACGGAACACCTGTTCGCTGCTCACGAGAAGCCAGTTATCAAACATTTAGGTTTAGGTGTGACGCCATTTTTACTCATGAACAAAGAGTTGATTTGCACGCATTGCGGCGAACGATTCCATCAATTCACCAAGTTAAACACGCACATGAACCAACATTATCCAAATAATATTTGCTGTCACTGCGGCAAGGCGTTCTCGGCCGCGCACCGGCTGAAGGCACACCAAATCACCCACGAGACGGAAAATAACAAGTGTGCGAAATGCGACAAGGTGTTCGAGACTAGGGTACAGTTTAATAGGCACGTGTATCTGACGCACACGTCCGAGTTCCGCTATCGCTGCCCCTACTGTCAGGAGGTGTTCAAAACGTACTCGGAGCGGCTTAAGCATTTAAAGAACACGCACGGTAAAAAGGTTGAATATCCATGTAACTTTTGTCCCAGAGTGTTTTCTATGTACAACCAGAGGACCAGGCATATACAACAGGTGCACATAAAGCATAGGCCGTTCCTCTGCGAACAGTGTCCTTATAAGTTTGGCACCGCTGCTCAGTTACGGAACCACATGGTCAAGCACGAAGGCGAGAGGAAGTTTCAATGCGAGGTCTGCAAGAAGATGTACGCGAGAATGAAGACCCTCAAGGAGCACATGCGGATACACAACAACGACAAGCGTTTTGTCTGCGAGTTTTGTAACAGCGGCTTCGTTCAGAAGTGTAgaGGCAAAGCTGATGTAGTGAGAGTAAAAGAGGAAGAGATTGCCGCTGATTACACAGCGATTACGGCTAACGATGAGGTTATTAAGCGGAGGCTCGATGGCAACGCGCGCCGGGCGATTTTCAGAAAGAATATCAAAGTTATATTGTCATCGTGTACCGCTTACCCATTTAAATACAGAAAGGGGACGTACCTATGTTTCTTCTGTAAGAGCACCTTCCTGGAGCCGGAGAAAATGAGGGAACATTCTCAGCGCGTACACTCGGATGTTATGTTGAAGCCGCGAAAATATGATCCGCTGAAAGTCGATTTTTCCATCACCGTGTGCAAGCTCTGCGGTGATAGTATAGCCGGCTATTCAGAATTGAAGAAGCATCTGATAGTTCACGGAAAGACGATAGATTGTACGTACGGCGACAGCATCCTGCCGTACAAGCTCAGTAAGGATGAGCACTGTTGTCAGATTTGCGGCAAGCGCTACGAGATGTTTCTGAGCCTGCATAAACACATGAACGACCATTACGAGCACTACATTTGCGAGACGTGCGGCAAGGGATTCGCGACGATACAACGGATGCTGAATCACGGCCGGATACACGAGCGGGGTGAGTTTCCCTGCAAGCATTGTGGTGAAAGTTTGCCGTCGTACGCCGGCCTATACGCCCATGTGGCGAAAGTGCACAAGTCGAATAAGCGCTACAAGTGTCCCATATGCGATGAGAAATTCTCCTCCTACAAGTATAGGATGAAGCATTTGAACACGATACACAACGAGAAGACAGCGCTGTTCCCTTGTCCGTCCTGTCCGAAGGTCTTCGATCTGTGCAGTAGACGGACTGCGCACATCCGCTCGCAGCATCTGCAGGAGAGGAATCACGCGTGTACCACGTGCAGTATGAAATTCTTCTCGAATTACGAACTACAAGAGCACAGTATCAAACACGGCGGGCCGAGGATATATCAGTGTGATGTGTGTAAGAAGTCGTACGCGCGTTTAAAAACTCTACGTGAGCACATGCGGATACACAATAATGATAGGCGATTCGTATGTCCGATATGCGGCCAGTCGTTTATACAGAAGTGTAGTTTGAAACAGCACGTGAGGGTTCATCATCCAATGCAGATTAAAGATGGCTTCTAA
- Protein Sequence
- MSDLDTLTEHLFAAHEKPVIKHLGLGVTPFLLMNKELICTHCGERFHQFTKLNTHMNQHYPNNICCHCGKAFSAAHRLKAHQITHETENNKCAKCDKVFETRVQFNRHVYLTHTSEFRYRCPYCQEVFKTYSERLKHLKNTHGKKVEYPCNFCPRVFSMYNQRTRHIQQVHIKHRPFLCEQCPYKFGTAAQLRNHMVKHEGERKFQCEVCKKMYARMKTLKEHMRIHNNDKRFVCEFCNSGFVQKCRGKADVVRVKEEEIAADYTAITANDEVIKRRLDGNARRAIFRKNIKVILSSCTAYPFKYRKGTYLCFFCKSTFLEPEKMREHSQRVHSDVMLKPRKYDPLKVDFSITVCKLCGDSIAGYSELKKHLIVHGKTIDCTYGDSILPYKLSKDEHCCQICGKRYEMFLSLHKHMNDHYEHYICETCGKGFATIQRMLNHGRIHERGEFPCKHCGESLPSYAGLYAHVAKVHKSNKRYKCPICDEKFSSYKYRMKHLNTIHNEKTALFPCPSCPKVFDLCSRRTAHIRSQHLQERNHACTTCSMKFFSNYELQEHSIKHGGPRIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPICGQSFIQKCSLKQHVRVHHPMQIKDGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -