Basic Information

Gene Symbol
RRP40
Assembly
GCA_010014985.1
Location
JAAAKR010000238.1:11823-16774[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.8e-13 2.2e-10 42.0 0.4 4 46 636 677 634 677 0.96
2 3 1.2 1.5e+03 0.8 0.0 1 9 685 693 685 702 0.90
3 3 0.00072 0.89 11.2 0.3 23 44 728 750 714 752 0.90

Sequence Information

Coding Sequence
ATGACAACCCCTTTAGTACTCCTCCCGGGTGATGACGTCCCACCCGACTATCTCCCTCCCACCACCACGTCTGCTCCTTTGCGATTGGGACCGGGCCTCCGTTTGCTCTCCGAACAAGACCCTACTTCCTCAGCAACCAGATCATCTGGAGGTCATGTCCTGGCAGCGACCCATGCTGGACTCTTCTCGACAGACTTCAAAAAGAACGCCGTATCGATTGCTTCATTCCCCAACCGCCGCTACATTCCCACAACAAACGATCTGGTCATTGCGCAAGTCCACCACTCCAGTGCTGATTATTTTCACTGCATGATCACGCCCCAGACACCCCAAGTCCTTTTACCGCAACTTGCTTTCGAAGGCGCGACGAAGAAGACTCGGCCGATGCTGAGGGGAGGCGATCTGGTCTATGCCCGCGTGCATTCAGTCGGAGTCGGTGCTGGTGCGGAAGTCGAATTGACATGCGTGAATCCTGCGACTGGCAAGGCAGAACCGGGTGGATTGGGTCCTTTGACGGGTGGAATGGTATTTGACGTCTCTACGGGCACAGCGGCGAGGTTGATCCGGGCGAGTTCTTCTACGGCAGACAACGAGGATGGAGTCGAAGGATTGGTAGTATTAGATGAATTAGGGAAGAAACTGGAGAGTGTGGGAGGGTTTGAGATCGCTGTTGGAAGGAATGGCAAGGTCTGGGTGGACTGCTCAAACGGGGGAGATGCTGCTATCAAGGCGACGGTGGCCATTGGGCAATGTCTGACTACGATTGACGAGCATGATCTCAATACAACAGACCAGAAGAAGCTGGTTACGAGGACTTTACGAGCAATGAATCACTGCAATACCGCATGGTACTTTTTCATCTCTCATCCGTCAAAATCCCAAAGCGGTAAGGCCCGCGAAGACGCGCCGCTTAGCGTCACCAGACCCAAACTTGTCACTCCCACCGCGCCAACCTCCAGCTCGAAGGAGCTTTGCCTCTCCATTCCAATTGTTATTGTCCAAATGGGCCAGTCTTCCTCCCAGCCGCTTAATCATGGGCCCAACGAGCTCCCAGAAGATATTCAAGATGACGGTCCCTCCTTTGTAAATAATCATCGCAAAGACCTACCTACGATTTCGGAGAACGAGGAACCGCGTCGTGTCCCGGATGAAACACCTGCGTCGAAGCGGAAGAGAAGACCCTCGTCTGGGGGCGCCTCCAACGCCTGCGAAAAACTTCCTGTCGAGCCGGTACCTTCTTCGTCCTTGTCGCGAAATGATGAGCAGGGACACCGCCCGTCGAAGCGACATCGACCTTCTGATCCAGTGCAGAAGGACAAGAAGGATAGTCGCAAGGTAGGCGGGGAAGGAGATTCCGCCGCAAAGAATGGCGCAGCCAAAGATCAGGATATTCCTCAGCGTTCTGTTGTGATAAAAAAGAGTGATGCGCTGCCATCCGAGGATGCCACCAAGCCAAAGTCGCAGGCCTCTCAGAAGCGCGACAAGAAGCAGCCTCCTGCTTCTCAGGCGGACGGAGAGAAGCCACCCGTAAAAGCAGGCACACCGGGCTCTCCAGCAACGCCAAGTGCCTACCCAACGTTTCAGGATGAGCAAAAGCCCAGCCGTGCTCATAGCTCGGACAAGAAGGATACTCTGACTGGCTTTTTCACGTCAGATGAAGTCCAACTGCTGGAGAACTTCAAGCTGGAATTCTGTAACATCAATGGACTTTCAGCAGACAACTTTGACCATATGGTTCAGCACTCAGAACGAGACAAAACCGTGGACTTCCCCTGCGACCCGTCCATCATATCAAAGCAGGATTTTTGGAAGACCATTTACGAGACGATACCAAGGAGAGACCGGCGCTCAGTCTACCGTTTCATGAGACGCCACTTCCAAGCGTCCACCCAGAAGCCACATCAGTGGTCCCATGAACAGGACGAGGAACTGGTTTCCCTGCACGCACGGTACGGTCCCAAATGGGCTTTGATTGCCAAACTCGTCGGCCGTAGCGACGATGACGTCGTGCAGAGATGGAAAAACCGTCTCGAGCACCGAGGCACCATGCTACGGGGTCCATGGTCCGCGGAAGAAATTTGCAGCTTGCAGGATTCCCTGCACGCCGCATGGAAGAACATGAAAAAGGCCGGCTATTATGTGGGCAGGGATATCTATGAGATGGACGAGACCCGTGTCGGATGGGGGCAGGTAAGCAATCGCATGCAGAATACGCGGTCGAGACAGCAGTGCGCGGATAAATGGCGGAGAATTCGAAAGAGGGTTCTCGATCAGCGCGCGAGGGGCGATGTGGATGCTACGTATGAACCTACATCGGAGTTTCGGTCGCCAAAGAAGCCCAAACCCCCGGCTGTTACTCTTGTGGCTCAACAAAAACAGCCATCCAAGTACAAGAGCTCCGAGTATGTCAATTCTGATGATGAGGGTGATGAAGATAAAGAGCAGACGAGTGCTGTTCCTACACCTTCAATGAGACCTGCTGATCAGGATACTACGCCGAAGGAGAAGCCAGCGGAGACTGCTGAGAATGGGACATCTGGTCGTGAGAAGGAACCGAGCGAGCCTGCTCTTATGGACGAGCCGGTGTCAGAGTCTGGCACGGAATCCGAATCGGATTCTGAGAGTGAAGCCCAACAGCCCAAAGACAAACCAGAACAGGAATTCGCGGACGAGAGCAAGGTGTCCAACAAGAAGACTTCTGAACCCACTGCCACAAAGACCACCAATGACCCAACTCCCAAGGGCAGCTCGAAAGACGCGACAAAAGCGAAACCCAACGGAGAACCAACTCAACTCCCCAAAGGCAACATCAAACTAGAAGGCCAGCTTCAAGAGATGCCACGACCATCCAATACCAAAAACCAGACCGTAGCATCACCAAAATCTCATCCAACCGCACCTACATcccaacaacaaaaacaaaaacgaagACCACCAACGCCTCAAAAGCGAAAACGCTCACCCACGCCTTCCCACACTTCATCCTCACCCTCAGAATCCGAATCTGACGAAGACTCACAGCCAGACGCCTATTCTGCGCATGTCTCGCGCAAACGACAGTCTACGGATTCTGTTGGAGCAGATGCTACTGAGGCTGATTCCAAAGCCAAATGGCCCGGTAAGAATGTGAAGGATGATGGTGTTCGTCCGGGGCGTGGTCAGAAGGGCTCGGATGGGGAGAGTTCATCGGAGGACGCTTCTGAATCTGAGTCGGACGATGAAGATGCAGATGCAGAGGAGTCTGGTAGCGATGATGGTGACGGTGATGAAGaagagaaggagaaggagCAAGTTGAGCAAAATGCCAAACCACAGTCAAAGACAGTTGCATCGCCTGTCAATGGCACTAAGGCACAATCTCAGCAGGCACCtgcgcagcagcagcagcagcaaaagGCCATCGAATCTTCACGCACCAATGGAAAACCTACAACTAAGAATGACGAGAATGAAGTTGAAAATGATGCGGACGACGACAGCTCCACGACATCTTCATCCGAAAATGAAGAAAGCGAAAACCAAAGCGAGAATGAGAATGATGATACGGAAGGCAAGACCGTCGATGCTGCACAAAAGCCTGAGAAGAAGCCATCATCTAACAGTGAGGAAAAGAAACCTCAATATTCGTCCGATGAAGAGTCAGATGAGGGCTCGGAGTCGGAGTCGGAGTCAGAGTCAGAGTCGGAGTCTGAAGAGGAATCTGAAGGGGAAGAGGAGACTGCTTCTAATTCTATACCTCATGCTGTTGCTGCACCTCAACCGCAGAGACCATCTGGTGAACGACAGGCATCCTCTTCATCTACCAAGAACTCCACcgacaacaacaaaaataaaaacaacaataattataacaaacccAACGAGAACCAACCCGAAGACTCGAGCTCAGAAGACTCAGCCTCAGCCTCAGAGTCTGAATCCGAATCTGAACCAGAGTCTGGCTCTGAGTCTGGCTCCGAATCAGATACTGAGAATCAAGGCAATGCCAAAGAAAACCTTAAATCTGAACCGTCACCACCAAgacaaaaactaaaacaagCGTCGCCGTCGACAGCAAATCGCTCAGCACCTGTTGCACCACCTGCACCTCCCCGCTCTTCCGCTAAGCCTGAAAATGACGAGGACGAGGACGACGATGACTCTGATGACGACTCTGATTCTGAATCTGATTCTGACGAATCCGAGTCTGATGACGGCGACGACGACAACAACAacatcaacaacaacaacaacaacaataaccCCAAGAACGAAACAAAACGACAACCACACCCACACTTACAACGAAAACCCGAACAACAGCCCCCTCCCTCGAAAGCTCCCTCGAATGATAAAACTAACCTCATAAAACCACAGCCAACCTCAGACTTTGACTCTGATTCAGATGCAAGCTCGGACACAGACTCCGACTCCGACACAGACTCCAAAGCAAAAGCAAAAGGAAACGCAAAATGGAAAGCGCATATTCCTACCAAAGACCGAGAGCAGAACCACCAACATCAACAACCTAGGACCGGGACTGGTACTCGTCCTTCTCCCGACATGAAGAAAGAAGATCCCGGGATTAATGTCAAAGAGGTACACGAGTCTGATGACGATGAATCTGAGGATGACGAGGATGAGTCTGGATCTGAGGAGAGTGATGGTGATGACGATGTCCGGGTGAAGAAATTGAAGGATGAATCTGATGAATCGGATTGA
Protein Sequence
MTTPLVLLPGDDVPPDYLPPTTTSAPLRLGPGLRLLSEQDPTSSATRSSGGHVLAATHAGLFSTDFKKNAVSIASFPNRRYIPTTNDLVIAQVHHSSADYFHCMITPQTPQVLLPQLAFEGATKKTRPMLRGGDLVYARVHSVGVGAGAEVELTCVNPATGKAEPGGLGPLTGGMVFDVSTGTAARLIRASSSTADNEDGVEGLVVLDELGKKLESVGGFEIAVGRNGKVWVDCSNGGDAAIKATVAIGQCLTTIDEHDLNTTDQKKLVTRTLRAMNHCNTAWYFFISHPSKSQSGKAREDAPLSVTRPKLVTPTAPTSSSKELCLSIPIVIVQMGQSSSQPLNHGPNELPEDIQDDGPSFVNNHRKDLPTISENEEPRRVPDETPASKRKRRPSSGGASNACEKLPVEPVPSSSLSRNDEQGHRPSKRHRPSDPVQKDKKDSRKVGGEGDSAAKNGAAKDQDIPQRSVVIKKSDALPSEDATKPKSQASQKRDKKQPPASQADGEKPPVKAGTPGSPATPSAYPTFQDEQKPSRAHSSDKKDTLTGFFTSDEVQLLENFKLEFCNINGLSADNFDHMVQHSERDKTVDFPCDPSIISKQDFWKTIYETIPRRDRRSVYRFMRRHFQASTQKPHQWSHEQDEELVSLHARYGPKWALIAKLVGRSDDDVVQRWKNRLEHRGTMLRGPWSAEEICSLQDSLHAAWKNMKKAGYYVGRDIYEMDETRVGWGQVSNRMQNTRSRQQCADKWRRIRKRVLDQRARGDVDATYEPTSEFRSPKKPKPPAVTLVAQQKQPSKYKSSEYVNSDDEGDEDKEQTSAVPTPSMRPADQDTTPKEKPAETAENGTSGREKEPSEPALMDEPVSESGTESESDSESEAQQPKDKPEQEFADESKVSNKKTSEPTATKTTNDPTPKGSSKDATKAKPNGEPTQLPKGNIKLEGQLQEMPRPSNTKNQTVASPKSHPTAPTSQQQKQKRRPPTPQKRKRSPTPSHTSSSPSESESDEDSQPDAYSAHVSRKRQSTDSVGADATEADSKAKWPGKNVKDDGVRPGRGQKGSDGESSSEDASESESDDEDADAEESGSDDGDGDEEEKEKEQVEQNAKPQSKTVASPVNGTKAQSQQAPAQQQQQQKAIESSRTNGKPTTKNDENEVENDADDDSSTTSSSENEESENQSENENDDTEGKTVDAAQKPEKKPSSNSEEKKPQYSSDEESDEGSESESESESESESEEESEGEEETASNSIPHAVAAPQPQRPSGERQASSSSTKNSTDNNKNKNNNNYNKPNENQPEDSSSEDSASASESESESEPESGSESGSESDTENQGNAKENLKSEPSPPRQKLKQASPSTANRSAPVAPPAPPRSSAKPENDEDEDDDDSDDDSDSESDSDESESDDGDDDNNNINNNNNNNNPKNETKRQPHPHLQRKPEQQPPPSKAPSNDKTNLIKPQPTSDFDSDSDASSDTDSDSDTDSKAKAKGNAKWKAHIPTKDREQNHQHQQPRTGTGTRPSPDMKKEDPGINVKEVHESDDDESEDDEDESGSEESDGDDDVRVKKLKDESDESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-