Dero000935.1
Basic Information
- Insect
- Deinopsis erosa
- Gene Symbol
- -
- Assembly
- GCA_027574845.2
- Location
- JAODFZ020001893.1:430-2745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7 6.9e+02 1.4 3.3 1 22 411 432 411 435 0.90 2 10 0.026 2.6 9.0 0.4 2 21 446 465 445 469 0.89 3 10 0.00057 0.056 14.2 0.1 3 19 492 508 490 508 0.95 4 10 0.00099 0.098 13.5 0.5 2 23 529 551 528 551 0.91 5 10 0.25 24 5.9 0.3 1 21 556 576 556 580 0.90 6 10 0.006 0.59 11.0 0.6 2 23 593 615 592 615 0.95 7 10 0.00054 0.053 14.3 0.1 1 21 620 640 620 641 0.94 8 10 6.1 6.1e+02 1.5 0.3 3 21 659 677 658 679 0.84 9 10 0.0011 0.11 13.3 0.9 1 23 692 713 692 713 0.98 10 10 0.00046 0.046 14.5 2.6 1 23 719 741 719 741 0.98
Sequence Information
- Coding Sequence
- ATGATTGGCGAATACGAAGACGATGCACATTTCTGTTTACGTTGTCATATGACAATTATTGGTTTAGAGAATTATGTAACGCATAGAAAGAATGcttgcaataaaaatgcagGGAAATCTCAACTGCTACCACCTGATGAATCATTTGCATTGAAGGCCGATGATTTTTTCTCCTCGTTGGAATTACAAAGCAGCACTAAAAAGTCGACAGCGACACCACCATCAACAAGTGGAAAAAATTTCAGTGGCATTTTAACGCGTAGTAAAACATCAGCTGTCATTCAAGCGACCACGCATCATCACCAACAGCCATCGAAGAGCGGCAAAAATGCGTGGATTGGTGGACATCAATTGAAAGAGCTGGGAAGTGGTGACAATCAAACGAAATTGATTAAGGCTGTGGATAATTTAAGTCGACATATAAACGTGCCGTTGCGTCGAGATGAGTTGACTTATCAGCATCATCACAATCAGCAACAGCATCCGAGTGATGATGAGAGCGACGAATTCGATTACGACGATGAGGATTATGATGAGGATGATAATGTGCCTCCGCGTAGTCATACAGGTGGTAAATGGAAGCCGTCATCGCCGATTGATTGGAATGCGCCGAGTCCGAGTTATACGGGCGGCAAATGGAAGCCACGCAGTCCAACGCATCATGATGAGAAAGTACCGCCACCTACACATACCAAAGGAAAATGGTTACCCGAAACCGCTAAAGATCTGGAAATGTCAATCAAATTGAGGAAAATTAATTCGCCGTTTCGTAAAGCGAATGGCAGCGTGCAATATTGGTGCGGACCTTGCAATCGACATCTCGCATCAAAGATCGTTTACGAGCGACATTTAAAGTCATTACTGCACTTGAAACGTACGTTACATGAGGCCGAGTTCGATGACTCATCGCATTTGAATACAAACCTCGATAAAGAaggtagcagcagcagcagccagAGCAAAAGGACAATACGTAAACCTGTTGAATATTGGTCGCATACCACAACTGAAAACAATAAAGACACTATGAAAAATACTACTATAGAGACAACGAAAAGAATTCGCAGAAAAATCTACGTGAAATGTGGAGTATGCAGATCTCGTGTTACCTCTCAAATGATGGGAAAGCACTTAATCTCTCATTATCATTGTAGAAAAGGCGATATTACTCTTCCAGAAGCTAAGAAGATGGTGCTCGATAACATTCACGATATCGTCTTACAATCACCTTACCAATGTGCCGCctgcaaattttattgcaatacacaaaattatttcttacaaCATTGGAATAGTTCAATGCACAAAGAACAAATTCAAGCGTTCGAATTGATTTCATGCACTTTCTGCAATTTCTCAACATCCGATAATGACGCTATGAATAAACATTTAGTTTCCTACGAACATAATGAAGTTATTTCGGTGATCAATCGTTCCATGCCGATTATAATACGCGCGTTGTCGCCAATTAATTGCGTCGATTGCGGAAAAAGTTTTCGCTATAATATGCAGTTGCGGATGCACTGCGATTTGGAAGGACATCAATACACAGGGACCACAGTTCACGAATACCAAAAACCGCAAACCTGCAACGTATGccagaaaatattcaaatcgATGAATGCGCTGCAAGTGCATCTTGTCAACAAGcacgaaaacaaaatttacttttgCTCGCTCTGCTCGatgctttttaataattcagaTGAGATAATTGAGCATCGGAAAGGCGTTCAACATCGTAATGCATTGAAGGAGCGCAAAGGAACGAGCAAAAAGTGTGATTATTGTAATGTGATGTTtgataatattatgaaattgaaGGAGCATTTGCAACAAGAGCATCCTGAACGATCGCACGATTGTCCACATTGCGGTGAAAAGTTTGTCATATCGCAGGATTTGTCCGCTCATTTACGCGCCAAATCGTGCATTTTTAGTGCACGCAATGAACAAGAGAGGCAGGCGAATGCATGTGATCAATGCGAATTTAGCACCGATCGCCTATCCGagcttttatttcataaagcGCTACACGACGAGCCGAAAACCATTGATAGTGGAAAACATCAATACAAATGTCCATTGTGCGAGAAATACTTTGTTAAAGCCTCGCTACGCTACCACATACAAAACCACACGAATGAAAAGACGTTCGAGTGCTGCTACTGTAACGTGAAGTTCGCACGGAAGAATAATTGGTTGGCGCATGTTAAGAAGCATCAAGACAATGATCAGTTTCAAAGTAGTGCGGAAAAGAAGGCAGAGAAAAGCTACTTGTGCGCCACTTGTGGAGCCAACTTTAATAAAGCGTAA
- Protein Sequence
- MIGEYEDDAHFCLRCHMTIIGLENYVTHRKNACNKNAGKSQLLPPDESFALKADDFFSSLELQSSTKKSTATPPSTSGKNFSGILTRSKTSAVIQATTHHHQQPSKSGKNAWIGGHQLKELGSGDNQTKLIKAVDNLSRHINVPLRRDELTYQHHHNQQQHPSDDESDEFDYDDEDYDEDDNVPPRSHTGGKWKPSSPIDWNAPSPSYTGGKWKPRSPTHHDEKVPPPTHTKGKWLPETAKDLEMSIKLRKINSPFRKANGSVQYWCGPCNRHLASKIVYERHLKSLLHLKRTLHEAEFDDSSHLNTNLDKEGSSSSSQSKRTIRKPVEYWSHTTTENNKDTMKNTTIETTKRIRRKIYVKCGVCRSRVTSQMMGKHLISHYHCRKGDITLPEAKKMVLDNIHDIVLQSPYQCAACKFYCNTQNYFLQHWNSSMHKEQIQAFELISCTFCNFSTSDNDAMNKHLVSYEHNEVISVINRSMPIIIRALSPINCVDCGKSFRYNMQLRMHCDLEGHQYTGTTVHEYQKPQTCNVCQKIFKSMNALQVHLVNKHENKIYFCSLCSMLFNNSDEIIEHRKGVQHRNALKERKGTSKKCDYCNVMFDNIMKLKEHLQQEHPERSHDCPHCGEKFVISQDLSAHLRAKSCIFSARNEQERQANACDQCEFSTDRLSELLFHKALHDEPKTIDSGKHQYKCPLCEKYFVKASLRYHIQNHTNEKTFECCYCNVKFARKNNWLAHVKKHQDNDQFQSSAEKKAEKSYLCATCGANFNKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -