Basic Information

Insect: Deinopsis erosa
Gene Symbol: chn
Assembly: GCA_027574845.2
Location: JAODFZ020021046.1:26417-29159[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.3 4.2e+02 2.0 0.6 1 11 149 159 149 172 0.68

2 9 0.00037 0.036 14.8 0.7 1 23 252 274 252 274 0.98

3 9 0.0008 0.079 13.8 4.0 1 23 280 303 280 303 0.96

4 9 0.0003 0.029 15.1 3.2 1 23 392 414 392 414 0.99

5 9 0.12 12 6.9 0.1 1 23 418 441 418 441 0.95

6 9 0.48 47 5.0 1.0 3 23 446 466 445 467 0.93

7 9 0.00066 0.065 14.0 0.5 1 23 605 627 605 627 0.98

8 9 0.00071 0.07 13.9 1.7 1 23 649 671 649 671 0.99

9 9 0.0042 0.41 11.5 2.9 1 23 748 771 748 771 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.3	4.2e+02	2.0	0.6	1	11	149	159	149	172	0.68
2	9	0.00037	0.036	14.8	0.7	1	23	252	274	252	274	0.98
3	9	0.0008	0.079	13.8	4.0	1	23	280	303	280	303	0.96
4	9	0.0003	0.029	15.1	3.2	1	23	392	414	392	414	0.99
5	9	0.12	12	6.9	0.1	1	23	418	441	418	441	0.95
6	9	0.48	47	5.0	1.0	3	23	446	466	445	467	0.93
7	9	0.00066	0.065	14.0	0.5	1	23	605	627	605	627	0.98
8	9	0.00071	0.07	13.9	1.7	1	23	649	671	649	671	0.99
9	9	0.0042	0.41	11.5	2.9	1	23	748	771	748	771	0.93

Sequence Information

Coding Sequence: ATGGAAGTAGCAATGCCTATGTCTGGTAGTGCAATCGACTGCTATGAAGATATGTTCAAGGAGATCACCCGGAAGCTCTACGGGGAAGATGGGCTTCCAGAACTGACGCAAACTGATCGAACCCATCAACCATCCCAAGATAGAGGTCTTACACCAATTGATTACGATGTAGACACGCCGATATTAAAGCCTGAAGAACATTTGACTGCATTCGGATTGGCTGCATTAATGCAGAATGGATTTCCAACGCCGTttccaaacaaaacaaatccGAATTTTGAGGACAAATGGATCATAAGCGAGGATAATTTACCTTGGACTCAATCAAAAATCGCGAGCTATAATCCCGCTCAGAAATTGTGGCGTTGCGCGGAATGTGATTGCTTGGGATATTTGCCACGTGTCACAGAACATTGGTTGGGGACCCATTCGAACCTGAGGGTGTTCCAGTGCCCACAATGCCCGTATGAGAGTGCATGGGCCCGATGCGTCCGCATGCACTTATCCAGGCAGCATAATATCGATACGGAAGAGGTGACTGATACGCTTTTGAAAAACAACCCCGTCGTACAAGAAGTAACACGTTACTTGCAACGACTAAAAACGCGGCTCGAGGCGAATTGCTCGAAAGCACAAACATCCTCGCCCAATTTAGACGAATTTCAAAATcaatctattaataatatcaatcGACAAGTTCAACAGACTGTCACAAATACGCAAGAGACTCCGAATCCGTCGACCAGCAAGCGTTACAGTTGCAGTTATTGTCCGTATGCGACTGACCGCAGAGATTTATTTACCCGTCATGAAAATATTCATCGAGAGGAAAAACCATTTCAATGTTACGTCTGTCAGAAGCAATTCAATCGAGCTGATCATgtcaaaaagcattttttacgCATGCATCGTGAGCATGTCTATGATTTGAATCGAATACGTCGTCATCCTCCGAAAAATGCGTCCGGCATGTCCTACTATCAAAAGTACAATAATAATGCAACCGAAGAGCAGACTGAACAAAATGTTAATGGAATTAACAACTCTATCACCATTCCGAATGGTTTTAATAATCTATCGCGAAACATTCCATCAACGAATCGAAATAACATTGATTTGAAGACGAAAACGAATTTAATGAAAGGCAGCTCGAAGAAGAAGGGCGAGAAACGCTTTACTTGCTGTTACTGTCCATGGTCTGGAGTTGATAATTGGTGCCTAAAAAGACATATGAATACACATCTGAAGCCGTTCATTTGTGGGCTGTGTGATTATAAAGCTGCACGATCGGAGAGATTAGCAACACATGTACTAAAAGTGCATAATAAGAGAGCATGCAGTAAATGCACTTTTTTGGCTGATGACCAACAACAATTAACTGCACACCAACAGGAACATCATCCTCTGGAACAACGAAGCAACAGAACTTCATCAGCCGCCTCAAACGTTTTACGAAATACTAGTTTCGCTAATACTTCTCTAACTACAACAGCAACAAATACCAATTTTGCGCAAAATCAAACAATAAAGCCTCATGATATAACGGCCGCTGCCGTTTTATTGCAAGGAAATCGCCTCCTCCAGCCAAATGAATCAAAACAATGGAAACCTCACATACCAAAACAGCATGGCGCTGCTCGATTATTTAGTTATATGGAAGCGAGTGATGGATCGGATCCAGAATGCAATAATAGTTGTGGTGCTGAAGATATGAGCCGTTTGAGTCACAGAATACAGTCGGATTTTCTTGAAGCGGGGGATGTAGGTAGCTGCACAGCAGACGAAGATATTGAGGATACGGAACTTCCTCCATTCGTTTGCCAAGTATGCGGTTGCGAATTTGAAGATGATGGGTCGTTGGAAACGCATAAACTGACCCATAAACCACCAAGCGCCACATCTCCCGcaagaaaacaaaaagaaaatgtcaATCCAAAGCATAAATATCAATGCAAATATTGCAACCAAACATTTCTTAATCAAATGACTGTTATACAACATATGAATTCACATTCAACAATAAGCAATCCGGAATCGCAGAAGCGGTCACGTAAGCAAAGCCAACCAAAGAAAATACCAGCCagtgatgataataatagaaaattcgatttaactAAAAGGATTAAATCGAATAAAACACTATactattgttttaaatgtagAGGTAAAAAATTATCTCCATTTTTTAATGAGAGTAATTTAATCTTACACAATCATTGGATGCATTCGAAGAAGAATGAATTCAAATGCGAACATTGCGAGCAAGTTTTTGATCATAAATATCAGGTAATATTGCATGGAAGTAAGGAACACGTTAATAAAAAGAGAAAAGAGAAGGAACCTGATTTGCCTAATAACGTACCTGTAATAACTGATGAACCACAATTTATTCAACCAATGAGTAATGCTGTCGCAAATCAAATTCCAATATCGAATGTTCCTGGTGTACCTGATATGACTAATATGACTAATATGACAAATACGACAAACACTGTACATAAATTGGGAATGTTTTTTGATCATTCATTTAATACTGGTATAAATGGCCACATGCCGCTTATTATACCAACATTTCCTCCGAACTAA
Protein Sequence: MEVAMPMSGSAIDCYEDMFKEITRKLYGEDGLPELTQTDRTHQPSQDRGLTPIDYDVDTPILKPEEHLTAFGLAALMQNGFPTPFPNKTNPNFEDKWIISEDNLPWTQSKIASYNPAQKLWRCAECDCLGYLPRVTEHWLGTHSNLRVFQCPQCPYESAWARCVRMHLSRQHNIDTEEVTDTLLKNNPVVQEVTRYLQRLKTRLEANCSKAQTSSPNLDEFQNQSINNINRQVQQTVTNTQETPNPSTSKRYSCSYCPYATDRRDLFTRHENIHREEKPFQCYVCQKQFNRADHVKKHFLRMHREHVYDLNRIRRHPPKNASGMSYYQKYNNNATEEQTEQNVNGINNSITIPNGFNNLSRNIPSTNRNNIDLKTKTNLMKGSSKKKGEKRFTCCYCPWSGVDNWCLKRHMNTHLKPFICGLCDYKAARSERLATHVLKVHNKRACSKCTFLADDQQQLTAHQQEHHPLEQRSNRTSSAASNVLRNTSFANTSLTTTATNTNFAQNQTIKPHDITAAAVLLQGNRLLQPNESKQWKPHIPKQHGAARLFSYMEASDGSDPECNNSCGAEDMSRLSHRIQSDFLEAGDVGSCTADEDIEDTELPPFVCQVCGCEFEDDGSLETHKLTHKPPSATSPARKQKENVNPKHKYQCKYCNQTFLNQMTVIQHMNSHSTISNPESQKRSRKQSQPKKIPASDDNNRKFDLTKRIKSNKTLYYCFKCRGKKLSPFFNESNLILHNHWMHSKKNEFKCEHCEQVFDHKYQVILHGSKEHVNKKRKEKEPDLPNNVPVITDEPQFIQPMSNAVANQIPISNVPGVPDMTNMTNMTNTTNTVHKLGMFFDHSFNTGINGHMPLIIPTFPPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01097003;
90% Identity: -
80% Identity: -