Dero017107.1
Basic Information
- Insect
- Deinopsis erosa
- Gene Symbol
- L
- Assembly
- GCA_027574845.2
- Location
- JAODFZ020035977.1:11396-15202[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.025 2.5 9.1 6.3 1 23 16 38 16 38 0.98 2 16 1.2e-05 0.0012 19.5 6.2 1 23 44 66 44 66 0.99 3 16 0.00067 0.066 14.0 1.2 1 23 72 94 72 94 0.97 4 16 0.0087 0.86 10.5 0.1 1 23 120 143 120 143 0.94 5 16 0.097 9.6 7.2 0.3 3 23 179 200 177 200 0.95 6 16 0.052 5.1 8.1 1.1 1 23 238 261 238 261 0.92 7 16 0.1 10 7.1 0.1 3 23 374 394 373 394 0.95 8 16 0.019 1.9 9.4 1.2 3 23 404 425 402 425 0.91 9 16 2.8e-05 0.0028 18.3 0.7 1 23 430 453 430 453 0.95 10 16 0.00034 0.033 14.9 1.7 1 23 512 535 512 535 0.96 11 16 1.9 1.8e+02 3.2 0.3 1 23 578 601 578 602 0.76 12 16 0.00073 0.072 13.9 5.1 2 23 613 634 612 634 0.97 13 16 0.016 1.6 9.7 0.1 1 23 643 665 643 665 0.95 14 16 0.00041 0.04 14.7 0.6 2 23 799 820 798 820 0.96 15 16 0.00027 0.027 15.2 0.1 1 23 828 850 828 850 0.99 16 16 0.0013 0.13 13.1 2.7 1 23 857 879 857 879 0.98
Sequence Information
- Coding Sequence
- ATGTCAAtctattcatataaattgATACACACAGAACAATTGCAGTTTAAGTGTCCATATTGTCAACGGTTATTCAAGCATAAACGGTCTAGAGACAGGCATACAAAGCTTCATACAGGTGACAAAAAATACAGGTGCCATCACTGTGATTCAGCGTTTGCAAGAAGTGACCATTTAAAAATACACTTAAAAACCCATGACAACAAGAAACCTCATCAATGCGAATTGTGTAATCGGGGTTACAACACAGCGGCTGCTTTAGCTTCTCATCAACAACACCATTCTAAGCAAGAACAAAAACGCTGCGGAAGTAGTGCTAGTCAAAGTAGCGTGGTTCGAACCCCAAGTCCAGTTTTTTTCCGGTGCATCTTTTGTCCAGAATCATTTGAAAAAGCAACGTTATTACAAGAACACATTATgattaatcataaaaacaaTCTTACAACGCCTACCCATATAAAACAACCAAAACAATTCATAATGGATCCTAATTCTCCAATATTAAAATCTGCTATCGATATGCCAAAGATTGCCTGCATGTATTGCGGGAAAGATTTTCTTAGCATGGAACACATGTATCAACACATTCAAGTTGATCATCGCGCATTTCTCAACGCAAGTGcgcaaaatatgaattatacaCCGCTTCAATCACCAAGCGTTGTAGAAGATTTATCGCCCAAGCAAACACGTCAGAACAACTCGCCAACATACGCTTGCGACAAATGTACAATGAAGTTTGATTCGTCCATATTATTGCACGAGCACAATCAAAATGTACATTGGGGAGCGAcacattcattcaaatatgaatttaaccctttgaattcaaatatatCACTAGATAAAATACAATCTAGTGCACCCCAATCAAAACCTACCGATCTAAGTCGTAAGAGACGAAGCACCGGCAATTCACCAGAGTCCGAAAAACGGAAATCTGATGATACGGCTCTTTTAAAAGAGACTTCTCCTTCGACTGGTAGTCCTTACGAAGCTAATGACAGACCTTGTATATGCGCATATTGTTACGCTCAAATGCCGAATTTTAAACTGTTTTTAGCCCACATGGAAAATCACGTTGCCATGAATCCCGCCGGTAACAATATAGTTGGTTGCTGTCCTCTTTGTGGTGAAGCGGCTACTAGTGCGCTTGAGTTGGGACGTCATATTTATAACCATGCCATTACAAATGTTACAACAAAATGTTGTGGCAGTTGTAAACAACCATTCGAACAGGACGATCAGCTCCAGCGACATTTAATTCAAGTGCATTCGCAGGCGTATTATAAATGCACCATCTGCAACATGATGTTTGATTCGGAATATAATCTACAGGCTCATTTCTCTGTCACGCACAACAATGACTGCAGACATTATCGCTGTACTTTATGCACTAATCAAATTTTCCATGATAAATTTACGGCAGAACTTCACGTTAATATGAAGCATAATATCCGGGCGCCAGCAGGAGGTACCAATGCCCAAAATTACCCATTGCAAAGAATGCCGATGGGTAGTGATGTGGCATTATTCCAATGCCCATTTTGCCGAAGATCATTCCAAACTGAATATACTCTATATATGCATATGCTCCAAGAACACAACAATCCGCGTgaaGGAGATAATTCAAGAGAAGGTACTGCATCAGGCGGCCCGACTGTACCGCAAAACTTTCATACATATAACGTGCTAATATCTCCTCCGGAAAACCTCGACTTGAAAGGCGGCTACAATTGTGAAATATGCAATCGTACTGATATATCAAGCGAAGCGGAACTTGCTGCACATAAAAAGTTGCATCACGCCAAATCAAAAGTTGGTACTGTTAGTTTACAATGCGCATACTGCAAAGAGCATTGCAAATCGCGTAGTGACCTCGATAATCATATGAAGACGCACCAAATTGCTTGTGGTAAAGGTAAACACAAATGCAATATTTGCGATGATATATTTGGGTCTAATGATGCTTTGGCGGAACATAAATTGGCacattgtaaaattattgcgGGAAACAGTTGCACCCATTGCAAAACACTATTATATGATGAGCAATCGTTCTATAATCATCAATTGCATCATAGCAATACTTCAGCAGTTAATAAAAGCAGTTCTCAAATATCGCTTCCTGCCAATTGCATTATCTGCTGCCAAACTTTGCAAACAGACGtcgaaattaaattgcatgctaaatttcatttgcgacatttgattaaaaaagaattagtTTGCGTTATATGTAGCAAAGTATTGGGCGCACATGATCCGAATGATCTCCGTCCGCAAATCAATATTTGTAATGAATGTATCAACGCAAAAGGAACATTTACTACTTTAGAGGGTGAAGACCAAACTCGTGATCCTGAACTTAGTTTAAATgatgtattaaatttacaatgcAACCTGTGCCAATTTCGTTTTTCGAGTACTGCGAAATTGCAAATTCATATGATTGAACATAATTTCATGGGAATGGGACAATTTCAATGTTATATATGTTCATCTATTTTTACAACAGCGGTTGGATTACAAAGTCATATTATCACTCATGGACTTAATAATAGACCGTACGAATGCTCTTTatgtaaaaagaaatttttcttCGAAACGGAATTGGAGAATCATAAAATGAGACACTATCTACCAAAGAAACATAATGGCATTACACAAGTAGTCCCTacaatatatcataaatacatgCTGTGTGACAAATGCGAGTTGACATTTCCGGAAATACTCTTCAATAAACATTCGATGGAATGCAAAGCGGTGCccaaaaataatgaaacagGCACTAGTGTTACCGGAAACGCATTGGACGTTAAAGATAATAATGAGGAGATTAGTGTTAAGGATGCTGAAAATACAAATGAACCCGATAAagcataa
- Protein Sequence
- MSIYSYKLIHTEQLQFKCPYCQRLFKHKRSRDRHTKLHTGDKKYRCHHCDSAFARSDHLKIHLKTHDNKKPHQCELCNRGYNTAAALASHQQHHSKQEQKRCGSSASQSSVVRTPSPVFFRCIFCPESFEKATLLQEHIMINHKNNLTTPTHIKQPKQFIMDPNSPILKSAIDMPKIACMYCGKDFLSMEHMYQHIQVDHRAFLNASAQNMNYTPLQSPSVVEDLSPKQTRQNNSPTYACDKCTMKFDSSILLHEHNQNVHWGATHSFKYEFNPLNSNISLDKIQSSAPQSKPTDLSRKRRSTGNSPESEKRKSDDTALLKETSPSTGSPYEANDRPCICAYCYAQMPNFKLFLAHMENHVAMNPAGNNIVGCCPLCGEAATSALELGRHIYNHAITNVTTKCCGSCKQPFEQDDQLQRHLIQVHSQAYYKCTICNMMFDSEYNLQAHFSVTHNNDCRHYRCTLCTNQIFHDKFTAELHVNMKHNIRAPAGGTNAQNYPLQRMPMGSDVALFQCPFCRRSFQTEYTLYMHMLQEHNNPREGDNSREGTASGGPTVPQNFHTYNVLISPPENLDLKGGYNCEICNRTDISSEAELAAHKKLHHAKSKVGTVSLQCAYCKEHCKSRSDLDNHMKTHQIACGKGKHKCNICDDIFGSNDALAEHKLAHCKIIAGNSCTHCKTLLYDEQSFYNHQLHHSNTSAVNKSSSQISLPANCIICCQTLQTDVEIKLHAKFHLRHLIKKELVCVICSKVLGAHDPNDLRPQINICNECINAKGTFTTLEGEDQTRDPELSLNDVLNLQCNLCQFRFSSTAKLQIHMIEHNFMGMGQFQCYICSSIFTTAVGLQSHIITHGLNNRPYECSLCKKKFFFETELENHKMRHYLPKKHNGITQVVPTIYHKYMLCDKCELTFPEILFNKHSMECKAVPKNNETGTSVTGNALDVKDNNEEISVKDAENTNEPDKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -