Dero007938.1
Basic Information
- Insect
- Deinopsis erosa
- Gene Symbol
- Zfpm1
- Assembly
- GCA_027574845.2
- Location
- JAODFZ020016578.1:940-3852[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0099 0.98 10.3 2.0 1 23 447 470 447 470 0.89 2 13 0.038 3.8 8.5 0.0 3 23 591 612 589 612 0.93 3 13 0.00041 0.041 14.7 0.5 1 23 620 642 620 642 0.99 4 13 6.7e-06 0.00067 20.3 1.7 2 23 645 666 644 666 0.97 5 13 0.0019 0.19 12.6 3.6 1 23 672 694 672 694 0.98 6 13 1.5e-05 0.0015 19.2 4.9 2 23 701 722 700 723 0.95 7 13 0.0002 0.02 15.7 5.6 3 23 761 782 759 782 0.95 8 13 0.006 0.59 11.0 0.1 2 23 798 818 797 818 0.97 9 13 0.0006 0.06 14.1 2.3 1 20 824 843 824 846 0.92 10 13 0.00014 0.014 16.2 0.4 1 23 854 876 854 876 0.99 11 13 0.00066 0.065 14.0 3.1 1 23 882 904 882 904 0.98 12 13 1e-06 9.8e-05 22.9 2.1 1 23 910 932 910 932 0.98 13 13 0.00016 0.016 16.0 5.4 1 23 938 960 938 961 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCGAATAATACAATTTGTCCCGTTTGCACCTTATACCTTCGTCCTGGCATCACATTAGAAAGCCATTTAACAAGCCACCCCAAACAGAAGGTGATTGAGGCGTTGGTGAAGCTATCTATAGGAGGCAAACAGAATGAGAACGTCCATCAAATGGAAACCATTCAGCAGCATTCACAGCAGCCcagtcatcatcatcaatggCATCATCAGGAAGTACAAAGTGGCATGCAATCAACAAATCATTCAATTATCTATCAGCAGTTTATGGCGTCACCGCAAGCGAATCTAATTGGCCAGCAGTACGTCACTTTACCCACCGTTTTCAATGCAACCACACAAATGATGTGCCAGCCGTACATGTATCAGCAGCAACAAGTCATCCTATCAACGGGCACAACAACAACCacctcgtcgtcgtcgtcgacaCCTTTCAATCGGCTATTGCCCATTGAGCCGAAACCCGACCATCAAATGCTTGAAATTAGTGAAATTACAACGGGGACGACGACGCAAGAGACATCTAGTGAGGCAACAGCGAAACCTAGCACAATTACAGAGACTTGTAGTGaggaattaataaatactaaGCAGGACGATTTAGCAGCTGAAGTTAATTTAGTGAAGCATAATGCGTACGATGATGACGAATTCATTGCGGGTTCGCCGTGCTCGTCGGCCGGTTCGGATTTGATACGCGTGCGGAAAGATTTGAATAATGAGGGGACGTCCGAGCCATCGACTTCCTTCAATAGCACATCGACGCCTTCTAGCGTCCGCCTAGAGAATTATAATGGCAGTAATGAGTTTATCGACACGTCGAATGATTTCTGTTGCACGAAtccgtcgtcgtcgtcgcaaACGAAACTTGTCGAGCATTTTGATTATGATGATGCGGACGATGATTATGAGAAGCCTTCCGTTTTGATGAATATCGGTGAATATATCTATAATAATCGTAGTGATATGATAAATGAGGATGAGCAATTGTCGATGGATAGTGCGAATATACGTGCGGATGAGCATATGCCACCTAGAGGGGAGTTGAGCGGGCAGGAGAGTAATGCGAGCGATATGGCGTGGGCGCGTTACAACCAGCAACATCAAACGGTGCCCTTAGATGGCGCTGCACCAACCACAAACCCTTCCTCCTCGTCTACGTCCTCTTCACAGCATGCGGCTAGCAATTACGATTACATCACGACGGCGACGACGACGAATGAAATACGCGACGAATCTGAGCAGTCGGATGATGTGGATACACCTGATCCGGTGCACATCGCCTACGACAGTGATATGCCGACGGTGAGCGGCTACTCGGATCCGCCGATTCAGTACCGTTGTCCGACGTGCGGTAAGAATTTCAGCTGTCCGAAAGAGCGGCGCGTCCATCAAGCGGAGAAGCACAACGCAAAGCTGAATTTGATTGGCGCTAAGCTAGACTCGTCCACGCAACAGCTGAATAGTGTGCATTCAAGGAAAATCAAGAAGCTGACGATACGACCGAAAAAAGTCGATGAGATTAAATGCGAGAACAATTTCGATAATGTCTTCACGAACAAGCTGAAAATTGAGGTGACGCATAGTACAACATTGCTGGCGCCATCTATGAGCGGTGCTGCATCCACAGCAGCGTTGTTGGGCGATAATAGCAGTAAATTGCAGTGTAACGATGATGGGGAAGCGAACGAGCTAGGGAGTAATGTGGAACAGAATGCAGATGCGTCTGCTGGTATTGGTAgcgatataataaatataccgACTATATGCACGTACTGCGATGCGATTGTGCCGACAAAGGGTGGGCTACGCGTTCACTATCTGGAGGCGCACAATTTCGCCGCCAACACCAAGTACAAGTGTCGGCAGTGCGACGAGCCGTTCAATTCGGAGCCGAAATTCAATGAGCATCTCAAAGTGCATCCGTTAGAGTGCCGGCTGTGTGGTAAATCGTTTGAGCGTAGACAGAATATGCAGATGCACATGAAACGGCATTATGGTATTAGGCCGTATAAGTGTACGGTGTGCGAGAAATCGTTCTTGACGAAGCAGAAGTTGAATGAGCATCATTTGATGCATACGGGCGAGACGCCGATTAAGTGCACAATGTGCGATAAGTCGTTTCGTCGCTTCTCCAACTACATCCAGCATCGCAACAGGCATCACTTGAAGATTAAGCGTAAGGGTAGGGAGTATGTGTGCTTCTGTGGGGAGGTGTGTCAATCGTTGAAGCGGCTAGCGTGGCATAAGGAGATACACGACAATAAGCCGAAATGTTGCAGCTACTGCTCGGAGAAGTTCATACACATGTCCAGTTTGACGCGACATATGCGACGCGCACATAACGAACGCTACGTGCCGCAGAATAAGACGCAAGATGAGAATGTGGAGTGTCCGATCTGCAAGGGCGTCTTCATGAAGAGCTCCCTTGATGTGCATATACGTAAACATAGCGGCCAACGTCCCTACACCTGCCTCTTCTGCAACAAGGACTTTACCACCAAGTGGAACTTAAAGTTGCATAAGTGGACGCACGCGACCCGCTCCTCGAAACCGTACAAGTGCGATCAGTGTAAGGGGGCGTTTGTGCGCGAAAGCGATTACGTCTCGCATATGAATTCGCACAAATCGATCAAACCGTACACGTGCAATTATTGCGGGGCGCAATTCATACGAAAGTATAATTGTTTGCGGCATGTGCGCGAACACGAAAAGGATAAATCGTACGCGTGTCAAATATGTGGTAAACAATTTCATCGCTCCTATTATCTAAATGATCATATGCGCGTACATAATGGTATTAGACCATTCAGTTGTAATATCTGTGGGAAGACATCGACAACGAAAAGTAATCATAATAAACACATTAAAATACATCATGCGCGCGATCCAATCACCACTgagaattaa
- Protein Sequence
- MEANNTICPVCTLYLRPGITLESHLTSHPKQKVIEALVKLSIGGKQNENVHQMETIQQHSQQPSHHHQWHHQEVQSGMQSTNHSIIYQQFMASPQANLIGQQYVTLPTVFNATTQMMCQPYMYQQQQVILSTGTTTTTSSSSSTPFNRLLPIEPKPDHQMLEISEITTGTTTQETSSEATAKPSTITETCSEELINTKQDDLAAEVNLVKHNAYDDDEFIAGSPCSSAGSDLIRVRKDLNNEGTSEPSTSFNSTSTPSSVRLENYNGSNEFIDTSNDFCCTNPSSSSQTKLVEHFDYDDADDDYEKPSVLMNIGEYIYNNRSDMINEDEQLSMDSANIRADEHMPPRGELSGQESNASDMAWARYNQQHQTVPLDGAAPTTNPSSSSTSSSQHAASNYDYITTATTTNEIRDESEQSDDVDTPDPVHIAYDSDMPTVSGYSDPPIQYRCPTCGKNFSCPKERRVHQAEKHNAKLNLIGAKLDSSTQQLNSVHSRKIKKLTIRPKKVDEIKCENNFDNVFTNKLKIEVTHSTTLLAPSMSGAASTAALLGDNSSKLQCNDDGEANELGSNVEQNADASAGIGSDIINIPTICTYCDAIVPTKGGLRVHYLEAHNFAANTKYKCRQCDEPFNSEPKFNEHLKVHPLECRLCGKSFERRQNMQMHMKRHYGIRPYKCTVCEKSFLTKQKLNEHHLMHTGETPIKCTMCDKSFRRFSNYIQHRNRHHLKIKRKGREYVCFCGEVCQSLKRLAWHKEIHDNKPKCCSYCSEKFIHMSSLTRHMRRAHNERYVPQNKTQDENVECPICKGVFMKSSLDVHIRKHSGQRPYTCLFCNKDFTTKWNLKLHKWTHATRSSKPYKCDQCKGAFVRESDYVSHMNSHKSIKPYTCNYCGAQFIRKYNCLRHVREHEKDKSYACQICGKQFHRSYYLNDHMRVHNGIRPFSCNICGKTSTTKSNHNKHIKIHHARDPITTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -