Dero018806.1
Basic Information
- Insect
- Deinopsis erosa
- Gene Symbol
- topi
- Assembly
- GCA_027574845.2
- Location
- JAODFZ020039708.1:16685-20606[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 3e-05 0.003 18.2 1.2 2 23 10 32 9 32 0.96 2 29 0.35 34 5.5 6.6 1 23 36 58 36 58 0.97 3 29 0.044 4.3 8.3 1.7 1 23 93 115 93 115 0.92 4 29 0.00011 0.011 16.5 0.3 1 23 121 144 121 144 0.97 5 29 3e-05 0.003 18.2 3.7 1 23 155 177 155 177 0.98 6 29 2.5e-05 0.0025 18.5 4.6 1 23 182 204 182 204 0.98 7 29 1.7e-06 0.00017 22.2 1.1 1 23 210 232 210 232 0.97 8 29 3.7e-06 0.00037 21.1 3.5 1 23 238 260 238 260 0.98 9 29 0.00015 0.015 16.1 1.1 2 23 327 349 326 349 0.96 10 29 0.00014 0.014 16.1 0.4 1 23 353 375 353 375 0.99 11 29 0.036 3.6 8.5 2.8 1 23 381 404 381 404 0.96 12 29 0.0032 0.31 11.9 0.5 1 23 410 432 410 432 0.95 13 29 0.0096 0.94 10.4 0.5 1 23 438 461 438 461 0.94 14 29 0.001 0.1 13.4 4.0 1 23 473 495 473 495 0.97 15 29 0.0022 0.22 12.4 0.5 3 23 502 522 500 522 0.97 16 29 8.3e-05 0.0082 16.9 1.5 1 23 528 550 528 550 0.98 17 29 2.8e-05 0.0028 18.3 7.8 1 23 556 578 556 578 0.98 18 29 0.00068 0.067 14.0 0.2 1 21 584 604 584 605 0.95 19 29 0.33 33 5.5 1.2 3 23 625 647 623 647 0.91 20 29 0.00047 0.047 14.5 0.9 1 23 666 688 666 688 0.98 21 29 0.00094 0.093 13.5 0.2 1 23 692 714 692 714 0.97 22 29 0.0038 0.38 11.6 0.0 1 23 720 743 720 743 0.97 23 29 0.00027 0.026 15.3 0.4 1 23 749 771 749 771 0.98 24 29 0.0054 0.54 11.1 2.0 2 23 779 800 778 801 0.89 25 29 6.4e-05 0.0063 17.2 3.8 2 23 813 834 812 834 0.97 26 29 6.4e-05 0.0063 17.2 4.3 3 23 847 867 845 867 0.96 27 29 4.7e-05 0.0047 17.6 2.1 1 23 873 895 873 895 0.99 28 29 2.1e-07 2.1e-05 25.0 1.5 1 23 901 923 901 923 0.98 29 29 0.033 3.2 8.7 0.1 1 21 929 949 929 950 0.90
Sequence Information
- Coding Sequence
- ATGGTTTTCAGACGTGGACAGAAATTGCGCTGTGAGTTGTGTGATAATTCATTTAAGAGTAAAAATACGTTACGCAACCATCTAAATACGGTGCATTCGAACGCTTTCTGTTGTGATAAATGCTCCACGACATTTCATCATATAATGGAGTACATAGTTCACATGAAAGAGCACACATCCGATCGACATTACTCTTGCATTCTGTGCAACTTTAAGGCTGAAGAGAAAGCTGAATTGAATGAGCATTTAACGAAAAGTCATGAAGGTACACCGAAATATTTCTGTCACATATGTGATAAGGGATTTATGGTGCAATCCATATTCAATGAACATGAAAATTATCACACGGGCGAACGGCCGTTTGTTTGCGAATTGTGCGGCAAATCGTTTCTCTATTCCAGATACTTAAACGCACATATTGCAACCACGCACAGATTGGAAATGGAGACGAATAATAAGATGTATGAATGTCGCGAATGCAACAAGCAATTTAAAACGAAGAAGTATTTCAATACGCATCTGAATATACATAAAGGCACATGCTTTATATGCGATTATTGCGGTAAAAAGTTCttctataaacataaattacgtATGCATTTGCGCATACACACCGGTTACAAGCCGCATGAGTGTGGTGTATGCAAAAAGTCGTTTTCCAGGAAGGAAAATCTGGTGGAGCACGAACGAGTGCATACTGGGGAAAAACCCTACATATGTGAATTTTGTCATAAAGGTTTCACGCAACGCAGCTCGTTAAAGATTCATACGAGAATGCATACAGGGGAAAAGCCTTACATTTGCATACTATGTAAAAAAGGGTGTATCGATGATTTCTTAGTGCCCATAGTAACATTGAAGGAAGAGGCGAATAATAAGGAATCGAAAACGAGCTCGAAGAAAAAGCCAAACACTCGAGGATATGCGAATGCGCTGCGAGAACGCGAACGAAATCTGAAAcggaaaaatgagaaaattgtATGCGACGTCTGCTCAAAGGAATTCAAGACGATAAAAACGTTGAGGcatcatttaaaaatcattcacaACAATTTCTATGTGTGCGAAACGTGTCAGGTATCGTTCACGCAAGTTATGGATTATACAGCGCATTTAAAGACGCATACAAATGACGATTATTATCGATGCGTTTATTGCGATTATAAGACGAAGAAGAACACCGATATGTCGACGCATTTAACATCCAAACACGACCAAGCACCCAAATACATATGCAACATATGCAATAAAGGTTTTGATGTTCACAGCTGGTACATTGAACATGCCAATTTCCACACGGGCGAAAAACCGTTCATTTGTGAATTATGCGGTAAGGCGTTCTTATATTCAAGATATCTATCAGCGCATAAATCAAGCACACACAAGGAGGCGATACGCGGCATCACAAACAAAGTTCACGAATGTGTGATATGCAAAAAACAGTACCAGCATAGAAATAGTCTTAAGGTTCATATGAATATACATACGggtaatatttcaatttgtgATATATGTGGAAAGCAATTGTCCAGCAAGGAGAAGCTTAAATTCCATTTACGCATTCACACCGGCTACAAACCGTTCAAATGTACGTATTGCGACAAAGCTTTTACTAAGAAGAATATTCTAACTGAACATGAACGAattcatacgggtgtcaaaccaTATTGTTGCACGTTTTGTAAGAAATGCTTTTCACAGCGTTCCAGTTTAGTTATACATATGCGTAATCACACAGGCGAAAAGCCTTACGTCTGTCATATATGTACGAAAGGATTCGTTGCTAAAGCAAtgttaaatttgcatttaaagtCCTGCAAAGGgAACGATTTGGACGAACAATATAGAATAATGAATGCGAAGGATTTAGCGTGTCTGAAATGTAATGGTAAAAAGTTCTCAACAATGCGCGGCTATAAGTTGCACATGTCCAAAAATCATGATGATGTCTATGATATTCAGTATCACTACACATATAACAATCTTTCGGATGTGTATAATTGTAAGACATGCGATAAGGAGAGTAATAGTCAAGAGGAGATGGAGAAGCATGTGAAAAGTCATCAGGAGCAGTACGCGTGTCCTGATTGCACGTCTGTCTTTATAAATCCCTACAAATATTCGACGCATGTGAATTCccataataaaaagtataagTTTCCTTGTCCCATATGTAAAGCGGTGTCGAAGACGAGAAGTCTGATTTTGTcgcatataaatattgttcatTTGAAGAAGTACATTCACACCTGTCCCCTATGTGATAAAGCTTCTAATAATGCGGTGCAAATGAAAGAACACATTCAAAGTCACACGAATAAGGACACAACGTTCGCTTGCATTGTGTGTGATAAAAAGTTTTCCTACTCGCAGTATTTACTATCGCATCAGGTGCGCCATCATAGAGTCAATTTTGAAGGTGTTCTTTTGCCGAATCAATGTCCGCATTGTAAAAAGCAGTTTGCCAAGCCTGAAAGTCTTAAGAAGCATAGCAAAAGACATGAACCTAGAGATAAGCCGCACGCGAAAGTTCATTTATGTGATATATGTGGAAAAGGTTTCCAtacgaaatataaattaacttcgcattATAGAGTTCATACGGGTGTTAAGCCctataaatgtttttcgtgTGAGAAATCGTTCACAAAGAAGGATTATTTGATAATGCATGAACGCATTCATACTGGTGACAAGCCATACGCTTGCGAATATTGTGGTAAATGTTTCAATCAAAGCGCATCGTTAAGAATTCATGTTAGATCTCATACGGGGGAAAAGCCTTATGCTTGTATTATATGCAATAATGGATTTTCCTCAAAAGGAGCGCTTAATACACATTTAAAATCATGTAACACTGGTGTCTAA
- Protein Sequence
- MVFRRGQKLRCELCDNSFKSKNTLRNHLNTVHSNAFCCDKCSTTFHHIMEYIVHMKEHTSDRHYSCILCNFKAEEKAELNEHLTKSHEGTPKYFCHICDKGFMVQSIFNEHENYHTGERPFVCELCGKSFLYSRYLNAHIATTHRLEMETNNKMYECRECNKQFKTKKYFNTHLNIHKGTCFICDYCGKKFFYKHKLRMHLRIHTGYKPHECGVCKKSFSRKENLVEHERVHTGEKPYICEFCHKGFTQRSSLKIHTRMHTGEKPYICILCKKGCIDDFLVPIVTLKEEANNKESKTSSKKKPNTRGYANALRERERNLKRKNEKIVCDVCSKEFKTIKTLRHHLKIIHNNFYVCETCQVSFTQVMDYTAHLKTHTNDDYYRCVYCDYKTKKNTDMSTHLTSKHDQAPKYICNICNKGFDVHSWYIEHANFHTGEKPFICELCGKAFLYSRYLSAHKSSTHKEAIRGITNKVHECVICKKQYQHRNSLKVHMNIHTGNISICDICGKQLSSKEKLKFHLRIHTGYKPFKCTYCDKAFTKKNILTEHERIHTGVKPYCCTFCKKCFSQRSSLVIHMRNHTGEKPYVCHICTKGFVAKAMLNLHLKSCKGNDLDEQYRIMNAKDLACLKCNGKKFSTMRGYKLHMSKNHDDVYDIQYHYTYNNLSDVYNCKTCDKESNSQEEMEKHVKSHQEQYACPDCTSVFINPYKYSTHVNSHNKKYKFPCPICKAVSKTRSLILSHINIVHLKKYIHTCPLCDKASNNAVQMKEHIQSHTNKDTTFACIVCDKKFSYSQYLLSHQVRHHRVNFEGVLLPNQCPHCKKQFAKPESLKKHSKRHEPRDKPHAKVHLCDICGKGFHTKYKLTSHYRVHTGVKPYKCFSCEKSFTKKDYLIMHERIHTGDKPYACEYCGKCFNQSASLRIHVRSHTGEKPYACIICNNGFSSKGALNTHLKSCNTGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -