Basic Information

Gene Symbol
Trerf1
Assembly
GCA_027574845.2
Location
JAODFZ020036056.1:1-7860[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.6e-12 3e-09 37.2 0.1 2 46 1193 1237 1192 1237 0.97

Sequence Information

Coding Sequence
ATGGGTAACACTCGTTCCTCTCGTATGATGCCGGAACAAGTTTACCAACCGGAAATGGACACTTCAATTTCCCTAACAATATCATCAactgatgataataaaaaagttcagGGAACAACAACCACTACAGAAGTTGTTAAGTTAACGGTGAAACGAGCTCGACCAAAAGCTGCATCGCCAAATAGGCAAGGTCCACAGCAATGTCAGGTTTGTGCTAAAGTGTTTGGAAATGCGTCAGCGTTGGCCAAGCATAAGCTAACACATAGCGATGAAAGAAAATATGTGTGTACCATGTGTGGAAAAGCGTTCAAACGACAGGATCACCTAAATGGTCACATGTTGACACACCGAAATAAAAAACCGTATGAATGTAAGGCTGAAGGCTGTGGTAAATCGTATTGTGATGCACGTTCATTACGAAGACATACTGAAAATCATCACAGTTCAACGACAAGCACAACAACAACGTCTAACTCGGCtgcggcggcggcggcagctgctgctgctgcatcAGCGAATGCGACAACAACATTGTCACCTGCACAAGGTGCAGCGTCTGGCGATGCTGCATCCCCACACGGATCGAGTTGTATTCAATATGCTCCACCACCTACTAACACATCATCTGGCAAAAGCCAATTACAGCAACTATTAGCAACTGAACCAGCAAAAGGTGGAAGCGGCGGCAATAACGATGGCTTAACGAAACAGCAATTAGATTTGATTCATCAAATCATGGAACAAACACAAAGGCAGTCCCAAACCTCCCttaaatcaacaacaacaaaaccaaCAGCTAAACCCGTTAGCAAAACGCCGATTAAAGTCCAACGAGTTTGGACCACACAACAGAATTCATCAAACAAAGGAAATGGAGGAGGAACGGGAGCAAATTCGCAAAATAAAGTATCTAGCAGTGGTCCAACATCAACATCAGGACAAGGAGCAAACAATAAAACAGAGCCAAAGCCAGTTGAATGCAACCTTTGCCataggaaatttaaaaatatcccAGCACTTAACGGCCACATGCGACTACATGGTGGATACTTTAAAAAGGACGctgacaataaaaaatgtgaaaagaaAGACGCAGCTGGCCCACCATTACAAACAGCAAGTGTTAGCGTTCGTGCGcttattgaagaaaaaattataaataaacgtatAACAACAACAGCGACGTCCACATCAGCGAACGCAAATCCAACAGCAACAAGCGATGATTCAACAGCATCTAACCAAGCAGCACAGCAACGCACAAATGCGCCACCATTATTCCCTCTAACAGTGCATTCCACCGCAAACTCAAACGATCTTGATACAAAAATAACTTCTTTCGTTGTTCCCGCACCACCGCAACATTCAGCAACGGAAAAATCTCGAAGACATTCCGATGCAGAGGCGTTCACAATGCTTCGTGCACCAAATAGTAATTCAGTAACAACTGCAACAGCGGTTGCAACCACAACAACGACAACAACACAACAAGAGGCCGAAGCATTGgctgatttaatattaaaaagggAAAAAGTTTCGGTGAAACGAACTACCTCCGATCCAGGTCAACAAACAACGACCGCTTcacaaataattcaatttcaatcgGGTGATTCATTCACATTGGCCTATCAATCAGATGATAGTGAATATTTATCGCCTAGTTTACAAGATGAAGTTTTTACGCAAGTGCAGGATAGCATGTTACTGCAAGGCGTTGACGCACAACAATTAGCTTCCATACAATTTCAGACAGACAGTTTGCTGCAAGATCAAACTGATCATCAGTTGCAGGATATTGCGCTTGAAGATTACACGAATCTTCAAGATTCAGTTGTGCAATCACCATCCTACCAATCTAGTCATTCGGTGAATCAGGAATTGCAAGCTGTTCTCGATTCGCCACTTCCAGAAAGCTTGGCTGAGTTTAGTACCTTCCATTCGACGGGAAATCTTGATATTCCATCGCCAGGTTACCAAACTCAATCCCCCGCTCAATATTCGTCGCATTCGCCTCATGCATCCCTTGCAACACAATCTCCTCTACAATCACCTCTCATACGACACGATTCACCTGGATTTGCATATCCAACACCACCTGCAAGTCACGAGGGACAGAGTCCATGCTTTGGACAAAATTCTATGTTACCTATGGTATCACCAAAGCAAAACGAATTTGGACAAATTATCAGTAGGGATATTGATGAGCCACCGCAGGCGTCGTCGCCATTATCAGCAGCATTTTTCACATCAACAATGTCAAGTTCCGCTGCGGTAGAAGAAGCATTAGAAGAAGTGCTTCCCGGCGAAAGTATAGCTGCTGACGAATTATATCCTTCACTTACAAATTCTCCACCTCCACAATCTCCTTTATCCGTTGGCTTAACGCCGGTAGCGTCTCCATTGTCAAATATTCCAACAACTTCGACAGTTTCATCCCCTCATTCACATAATACTTATACGCCATCTCCGAATACAGTCTCCTTTCCAATGTCACCTCATTATACACTACAATCACAAATGCTGCCAAATTCTGATGATCCATTGTTATCCAGCAGCCCAAAAGACTTTGCGACACgtaagaaatttgaatttaacgGCCTACCATTGAAAGTAATAAGCGGTAATGGTCTCTTAGATTTAAACAATGCAAACTTAACGGGAATACTCGTTGAAAGCAATggcgaaataaaatttatacaaacgGGAGGAAATGCATTTCAAGGCAAAAACATTCTTGTTACCGGAACTCCTATTGTTACAACAACCACAACTAACGCGCAACACAACAACACAGTTCAGCACAATATCATTAAGGATgaggatataaaaaattcacaaaaagtaaataataaaatactaaaaactCTACATTGCATGAATCAACAGaaacagcagcaacaacatcTACTAACTCATCGGCCTAAAGTCAATATtgacaatattataaaacatgatGAAACAAATAATGTGTTCCTCAGTCCTACAACAATTCCAGCAAGTCCTATAAGAGTATCAAGAAAACGGCCTAGAACTGAACCGCTACAACTTCCCGTTCTTCATCAATCAAGACTAAGAGCAACGCGAAGCAAACCGCAAGGGTCTGCTCCTTATACACCATTGCCAATCTTAAATCCAAACCGACATGGATCAGGCCTATACTTTTGTctcaaacaaaaaacaaacgATAATCAAGAGGAGTTGTATAGTAATACATGGAGCAACGAATCAGTGCCCGAATCAGATTCTACTCCTCATATAAATATAGGCCCACAATTCCAATGCACTAGTATTCCCCCTTTTATACCGGCCTACAATAGAATATCCCAAGAAAGAACTCACGAGGATCTCCTATGGGATCCAGGCATAACACAATGTTCGAATAGTGAAGTTGACATGTACTTGGATTTCGCGTGCTGCGCAGCGGTTCCTGGTGGAGGAAGAAATCAGGAATATGCCATGCATCTTCTTCACATGTGTGGCGGAAATATACACgaAGCGATGTTGAAACTGATGCAGCCAAGTCCGTCGCTTCCATCGGAACACCCATTGCTGCACTATCAATATTCAGAGAGTGATAAGTGGACTTCAGCTGAGACTGAATTGTTTCATCAAGCCATACATAAGCACGATAAGGACTTCTTCCTTATTTCCCAAGAGATTGGGACAAAAAGTGTCAAGCAATGCGTTCAATTTTACTATATGTGGAAGAAAGTTTGTACTGATGATTATCGACGTCTTAAACAAGTGCGAGATCGTAGACACGGTACAAATCGGAATTTTGATTATGATGAAGAGAAACCATATCCAGATGCCAAATTATTAGGAATTGCCGATACAGGTTCCCCAATGCCTATACAAGAGcacagaaattttatttgcgaATTCCCTGAATGTTCGGCCAGTTTCAATTCCCGAGCAGCTCTCAATGGTCATATTCGAATCCATGGTGGTACAGCAAGAAACTCACCGACACCGTCGCAGATCCATTACGAGAATAGCAAGAAATCAACATCAATAACAGCGACGGCAATGACAACAACCACTACATTAACCCCAGTTATGTGTCATAGCGATTCAACAGAAGACTACCCTT
Protein Sequence
MGNTRSSRMMPEQVYQPEMDTSISLTISSTDDNKKVQGTTTTTEVVKLTVKRARPKAASPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSTTSTTTTSNSAAAAAAAAAAASANATTTLSPAQGAASGDAASPHGSSCIQYAPPPTNTSSGKSQLQQLLATEPAKGGSGGNNDGLTKQQLDLIHQIMEQTQRQSQTSLKSTTTKPTAKPVSKTPIKVQRVWTTQQNSSNKGNGGGTGANSQNKVSSSGPTSTSGQGANNKTEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDADNKKCEKKDAAGPPLQTASVSVRALIEEKIINKRITTTATSTSANANPTATSDDSTASNQAAQQRTNAPPLFPLTVHSTANSNDLDTKITSFVVPAPPQHSATEKSRRHSDAEAFTMLRAPNSNSVTTATAVATTTTTTTQQEAEALADLILKREKVSVKRTTSDPGQQTTTASQIIQFQSGDSFTLAYQSDDSEYLSPSLQDEVFTQVQDSMLLQGVDAQQLASIQFQTDSLLQDQTDHQLQDIALEDYTNLQDSVVQSPSYQSSHSVNQELQAVLDSPLPESLAEFSTFHSTGNLDIPSPGYQTQSPAQYSSHSPHASLATQSPLQSPLIRHDSPGFAYPTPPASHEGQSPCFGQNSMLPMVSPKQNEFGQIISRDIDEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGESIAADELYPSLTNSPPPQSPLSVGLTPVASPLSNIPTTSTVSSPHSHNTYTPSPNTVSFPMSPHYTLQSQMLPNSDDPLLSSSPKDFATRKKFEFNGLPLKVISGNGLLDLNNANLTGILVESNGEIKFIQTGGNAFQGKNILVTGTPIVTTTTTNAQHNNTVQHNIIKDEDIKNSQKVNNKILKTLHCMNQQKQQQQHLLTHRPKVNIDNIIKHDETNNVFLSPTTIPASPIRVSRKRPRTEPLQLPVLHQSRLRATRSKPQGSAPYTPLPILNPNRHGSGLYFCLKQKTNDNQEELYSNTWSNESVPESDSTPHINIGPQFQCTSIPPFIPAYNRISQERTHEDLLWDPGITQCSNSEVDMYLDFACCAAVPGGGRNQEYAMHLLHMCGGNIHEAMLKLMQPSPSLPSEHPLLHYQYSESDKWTSAETELFHQAIHKHDKDFFLISQEIGTKSVKQCVQFYYMWKKVCTDDYRRLKQVRDRRHGTNRNFDYDEEKPYPDAKLLGIADTGSPMPIQEHRNFICEFPECSASFNSRAALNGHIRIHGGTARNSPTPSQIHYENSKKSTSITATAMTTTTTLTPVMCHSDSTEDYP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00430126;
90% Identity
iTF_00430126;
80% Identity
iTF_00430126;