Dpor022079.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- Hivep1
- Assembly
- GCA_905220455.1
- Location
- LR999976.1:651496-659851[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.6 6.4e+02 1.5 1.6 3 21 444 462 443 466 0.92 2 12 1 74 4.5 1.8 2 20 488 506 487 511 0.88 3 12 0.0028 0.21 12.5 4.7 1 23 525 548 525 548 0.97 4 12 0.0025 0.18 12.7 0.2 1 23 553 577 553 577 0.92 5 12 0.0015 0.11 13.4 0.1 2 22 628 648 627 648 0.95 6 12 0.0001 0.0074 17.1 1.5 1 23 704 725 704 725 0.98 7 12 5.9e-05 0.0043 17.8 0.4 1 23 731 754 731 754 0.97 8 12 0.00022 0.016 16.0 0.2 2 20 775 793 774 794 0.94 9 12 0.0054 0.4 11.6 0.8 2 23 805 828 804 828 0.96 10 12 0.054 4 8.5 5.8 1 21 835 855 835 857 0.94 11 12 0.0036 0.26 12.2 1.2 1 21 863 883 863 888 0.92 12 12 0.12 8.6 7.4 2.6 1 23 894 917 894 917 0.97
Sequence Information
- Coding Sequence
- ATGCTGTCCCCGCGAGAAGACGATGACGAAGACAACCATCTATGTATTAAATGCAACGCCACCATCATCGGCTTGGACAACTACATCAAACACAGAAACCAGAGATGTGGCAAACTGAAAAACGACGAGCCGAAACCAGGTCTGCCACCCATAGACCCCCTGGAACCCAGCTACAGCCTAGGAGCTGACGTGTTCTTCCAATCTCTAGAACTACAGAGCAGTGTCAAAAAAACATCATTGGCACGACTTACACCACCAATACCTATATCAAAACCAAATGACAGGAAAAACTTGATAGTGGCATCAACTTCTAGGGATATCCCTAGAATGAGTCCATTAGAAACCAACTTGAGGGGGGAGGATTGGATAGGAGGACATAGCTTAAGGATCGGGAGTAACATTGACAATCAAACTAAGCTCATCAATGCTGTGGCTAGCATAAGTGGTAACGTTAAGAAAGATATTCCAGCGACGTATACAATGTGTTATGAAGACTCGGAAGAATCAGAAGTTTCCGAAGAAGATGATGAAGAAGAACACGCCACTACCAGCAAGTGGAAGCCCCCTCCTAATTATACAGGGGGTAAATGGAGACCAGCATCTCCTGAACACGAAGACTGGGACATGAATGACCAAGACCATACAGGAGGTATCATTCCTGATGGTAACGATCGGGATGAAGACTATGATGCACCTCCTCCAGGACACACTAAAGGAAAATGGGTTCCCGGAGCCAATGAAAAGACTCAAATAATGCAGCCAATAATACAAAGTAAAGGATCAGTTCAATATTGGTGCGGGCCTTGCAATAGAAGACTGGGCTCACGAGCTATCTATGACAAACATCTACGATCGAGTTTGCATCTAAAAAAGGTTTTGCCTGAACATGAACTAGAGTTTTCAGGACATTTAGAACCCTTAAAAGTGGAAAAACGTATGCCACGTCCATCCCGATTTATTAACGATGGTATCTACTCTCAGATACAAAGAAAACGCAAGAAGGCTGGAACTAAATTAAATATTAAAATTGAGAAAAAGAAACGAAAGAGAAAACCCAACTACGTTCACTGCGGAGGCTGCAAATCTAGAGTCAGGCGACACCTGATGGGAAAACATCTCATATCTCATTACCATTTTCGTAAAGCAAGGGAAACTAGTAGCACTGTCTACCAACAATTAATTCTTGACAATATTGACGCTATAGTTCATCAATCGCCTTTTCAATGCAGCCCTTGTAAGTTCTACACCAATTGGCTCTCAAACTTCATGCAGCACTGGTTTTCGGAGGAGCACGAAGAGCGCATGTCCATAATGGAGGGTAGATTCTGGTGTTCTTTCTGCAAATTCGAATGTGACTCGTCTCAAGACATGCTGCAACACATGTCGGGTTCAGACCACAGTGAAGTGGTTGCTGTTATCAACAGATCCATGCCTATAATAATAAGGAAGAAAACTATAATAAAATGCCACACATGTATGAAGGAATTCAGATATAATATAGAAATTAAGAAGCATAGTGAGAAAACTGGGCATCCATTGGCGTTTACAGGAACAGATGATTACCAAGAGCTGCATAAGTGCCAGCATTGTAATGCAAAGTTTAAATCTTCATTGACGTTGGCAGCACATTTGAAATCCAAGCATAAACAAAGAGCATACATTTGTCTAGTTTGTGAGAAGAACTTTATTTCTTCCGAAGAAGCAAAGCGTCACAGACAAACAGCAGAACACAGGATTAAAAGGAAGGAGAATTTGAAGGAGCAAGGAATACCATGCAAGGACTTAACTAAGAAATGCCCATACTGTATTGACGATGTCGTTCTAAAGAACATTCTAGTACTAAAAGATCATATTCGTGCTGCTCACCCCGACATAAAGAAAAAGTGTCCAAAATGCGGAATGGCATTCATCCTATCCCAAGAAGTTACTAGGCACATCAGATCCAAAGCCTGTCAGTTCCAACCAACCACATCAAACTCCTCTATCTTCTGGAACTGTAGCCAGTGCCTCTTCACCACCGACTCCCAAGCCGAATGCTTCTTCCACGAGGTCCTGCACTCAGACCCTGTACAATCCACGGCTGGGGGAGGAGAGAAAGTCGTTCTAAAGTACATGTGTCCTTTATGCTCCAAGAGTTTCAAGAAGGCATCATTACGTCAACATCTGAGACAGCATACTTTCGAGAGGCCTTTTGTATGCGTAACTTGTGGAGCCAATTTTACCCGGCAGACAAGCCTGGCGAATCACAGAAGGAATGAACATAGCTCCAGGGTGAAACTACCGACTTTAGCCCAAGAAAGACCAAGTCCGAAAGTGGATTGGGAGTGCGGGAAATGTACCAAGAGATTTTCTAGCAGGTCGGCACTGTCCCGCCACGTCGCCGGCAACTGCACCGGGACCAGCCAAGCGGTGCGCTGTCCGCACGACCAGTGCAACTACGTGGCAGCCACTTCTCGACAACTAGCTAGACATCGCCGCTCCCACGGTGAACGTGTAAAGCACCATGAATGTGATTTATGCACATTCAAAACAGATCAGGCGAGCCACCTGAAAAGACACATGATGTGCCACAAAGGACTCAAACCTTACGCCTGTCCATATTGCCAGTTCACTTGCGGCAGTTTGGAGAATCTCCGGAAGCATGTGCTCCGCAGTGGCCGACACAATGATCTCTACCTATATGTTTGTCATCATTGCGAGTATCAGACAAACTTGGCTATCAAACTGCGGTCACACCTTACTACCGCGCACAGCGACAAATACAACGCAAAAACAGCCATAGATGCAGTGAAAACTCACCTTATGATCGACAGTGAGAAGCAAAGACTGAGGGAACTGACTGAAAATTCTAACTAA
- Protein Sequence
- MLSPREDDDEDNHLCIKCNATIIGLDNYIKHRNQRCGKLKNDEPKPGLPPIDPLEPSYSLGADVFFQSLELQSSVKKTSLARLTPPIPISKPNDRKNLIVASTSRDIPRMSPLETNLRGEDWIGGHSLRIGSNIDNQTKLINAVASISGNVKKDIPATYTMCYEDSEESEVSEEDDEEEHATTSKWKPPPNYTGGKWRPASPEHEDWDMNDQDHTGGIIPDGNDRDEDYDAPPPGHTKGKWVPGANEKTQIMQPIIQSKGSVQYWCGPCNRRLGSRAIYDKHLRSSLHLKKVLPEHELEFSGHLEPLKVEKRMPRPSRFINDGIYSQIQRKRKKAGTKLNIKIEKKKRKRKPNYVHCGGCKSRVRRHLMGKHLISHYHFRKARETSSTVYQQLILDNIDAIVHQSPFQCSPCKFYTNWLSNFMQHWFSEEHEERMSIMEGRFWCSFCKFECDSSQDMLQHMSGSDHSEVVAVINRSMPIIIRKKTIIKCHTCMKEFRYNIEIKKHSEKTGHPLAFTGTDDYQELHKCQHCNAKFKSSLTLAAHLKSKHKQRAYICLVCEKNFISSEEAKRHRQTAEHRIKRKENLKEQGIPCKDLTKKCPYCIDDVVLKNILVLKDHIRAAHPDIKKKCPKCGMAFILSQEVTRHIRSKACQFQPTTSNSSIFWNCSQCLFTTDSQAECFFHEVLHSDPVQSTAGGGEKVVLKYMCPLCSKSFKKASLRQHLRQHTFERPFVCVTCGANFTRQTSLANHRRNEHSSRVKLPTLAQERPSPKVDWECGKCTKRFSSRSALSRHVAGNCTGTSQAVRCPHDQCNYVAATSRQLARHRRSHGERVKHHECDLCTFKTDQASHLKRHMMCHKGLKPYACPYCQFTCGSLENLRKHVLRSGRHNDLYLYVCHHCEYQTNLAIKLRSHLTTAHSDKYNAKTAIDAVKTHLMIDSEKQRLRELTENSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00291169;
- 90% Identity
- iTF_01430303;
- 80% Identity
- -