Dpor016779.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999998.1:4118370-4142591[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0044 0.32 11.9 1.0 1 23 342 364 342 364 0.98 2 11 0.011 0.79 10.7 10.3 1 23 371 393 371 394 0.94 3 11 0.26 19 6.3 2.1 1 23 398 420 398 420 0.97 4 11 0.083 6.1 7.9 2.0 1 23 425 448 425 448 0.97 5 11 0.016 1.2 10.1 0.2 1 23 452 475 452 475 0.91 6 11 5.2 3.8e+02 2.2 0.5 3 21 489 507 488 512 0.88 7 11 1.3 93 4.2 0.4 2 23 565 587 564 587 0.94 8 11 0.0092 0.68 10.9 0.6 2 20 603 621 602 624 0.91 9 11 9.2e-05 0.0068 17.2 1.0 1 23 630 652 630 652 0.98 10 11 1.2e-05 0.00092 19.9 3.3 1 23 659 681 659 681 0.97 11 11 7.5e-05 0.0055 17.5 0.6 1 20 687 706 687 708 0.95
Sequence Information
- Coding Sequence
- ATGCGTTGTTGCGTTGCTGGATGCAAGAATGACTCGAGACATATCTCCAAATCACAGGGGATTACATTTCATGTATTCCCAAATGAGCCCACACTACGTACGGCATGGCTCCAAGCACTTGGCAAAGTGGACTGGACTCCGAAGGAACGGAGTGCAGTGTGTTCCGAGCACTTTCTGTGCGAAGACTTGTATGAAACCAAGAGTGGGCTGAGGAAAGTCAAAGTAGGAGCTGTACCGTTTATACTGCAGGATACAAGTACTTGTGATTATGGGGAGCCGGCAAGTTTAAAAGTGTGTCGTGTATGTCTCGTGATGGACTGCAAGTTGTTTCCAATAAGCGTTTATAATCTCAAACAGGCGTATGAACATCTAACTGGAGTCGCGGTGTGTGCTGAGGAGAAGCTACCTCAGAAGCTGTGTTATGAGTGTGCAGCGAGATTGGTGAATAGCTACAAGTTCAGGACAAAGTGTTTGCGGGCCAATTCACTTATGTTGGAAATCGTTAAAAAGCAGAGAGAGCTAACCCTACAAAACATAAAAACGATAAACAGAGAGAACAATCAGTTATCATCCCCACTCATCCCCAAATTCTATCAAGTTGACCACTTCGACCACCACATTGACTACGAACAGCCCAAAATCGAAGAAGACATAAAAGAAATCAAACGGGAAGACAATGAGATATATATTGCCGAGGGGGAGGAAATTGCTCCGGTGGAGACAGAGATTCAAGATGTTGTAGCAGATAATATTTCAGTAAAGAATTACTCCAGTGACGACAGCTTGCCATTAGAAAAGGCTAAGAAAAGAAAGAAACGCAAAATTGAAAAGAAAGAAGTTGTTAAAGTTAGAAAGAAACAGATAAAACGCGACCCAGCCGAGCCCAAGATCGACCGTCGCAGGAAACCGTTCCTAAACGACGACCTCAACGAGACATTATTCACGATAACTGACTTGACCTTCGAGGAACAAGTCGCCGAGATCGAGAAGAGACGAGACAGCGCCAACTACAAAAACGCTGTTTTCAAATGTACGGAGTGTTATAAAGGATTTCTGGACGAAGACGCTTATAATACGCATATGACGAGGCATACCACTCAATGCGGCGAACACTCGTGCGAGATCTGCAAGACGCACTTCAAGCACTCGCACGCGCTGCGCAAGCACATCACGGCGCACCACACGCAGCGCTTCAGCTGCCGCCAGTGCCCCTACGTCACCACGCACCGCCAGACCGCGCGCCTGCACGAGCGCTGGCATCAGGGCACCAAGTACCGCTGCCCGCACTGCCAGGACGAGTTCGTTAAATTCACCACGTACATGGGCCACATACGGATAAAGCACCCCTCGGACTTCGTGTGCGAGTTGTGTGGCTACTCCTTCGTCAGCATCAAGGGCATTGAGCTGCACAAGAAACTCAAACACAGGCTCGAAGATGGACAGGTGCCAGAAGATGGACCATTCTGTGAGCTGTGTAACGTAAGATTCGTCTCAATTGAGGCGCATAGAAGACATCTTAACGTATCTGGAAGACATGCTGATAAAGAGGGGAGGGAAGCGAACAAACCGAAAAAGGGACGCAAATCTAAAGAGATTAAGGAACGAGAGAAGAGATGTCGGGAGAAGAGCAGGGAATCAGAAGAGAAGAGGAAAGTGTATCCTAGTCAATTGAGGAAGGCGGAGGGACCTATACCTTGCGAGCAGTGTGGGCTGCAACTAGAAGATTCCCGCGCCTACCACGGCCACTTCAGGAGAATGCACCCCGACAAGAACCGAACCAAGTACCCGTCCATGAAGAGCCCTTGTATGTGTGAGGTGTGCGGCAGAATGTTCCAGAGCTACGCCCTCCTCAAAGACCACACGTGGGTCCACACCGGCGAGCGACCGTTCAAGTGCGACGCGTGCGACAAGTCGTTCCGAATGAAGCAGCGATTGGTCGCGCATCGACGAGTGCACAGCCAGATGAAGGTCTCCTACGCGTGCACTCTCTGCGGGAAGAACTTCTCAACACACAGTAATAGGCAGAGGCATATGTTTATCCACACAGGACTCAAGCCGTTTAAGTGTGAGATGTGTGGGAAAGGCTTCAAGCATGCGAGTGAGAAACGAGCTCACATCACATATGGCATGCTACCACCAGGCCCCCCGGGTACCGATATGGACGGAGTGCAACCAATATGGCCGCCTTGCGACCCTAAAATGACCGACATGAATATGATCGAAGACAAACCAATGTACTACACATTGAAAATATAG
- Protein Sequence
- MRCCVAGCKNDSRHISKSQGITFHVFPNEPTLRTAWLQALGKVDWTPKERSAVCSEHFLCEDLYETKSGLRKVKVGAVPFILQDTSTCDYGEPASLKVCRVCLVMDCKLFPISVYNLKQAYEHLTGVAVCAEEKLPQKLCYECAARLVNSYKFRTKCLRANSLMLEIVKKQRELTLQNIKTINRENNQLSSPLIPKFYQVDHFDHHIDYEQPKIEEDIKEIKREDNEIYIAEGEEIAPVETEIQDVVADNISVKNYSSDDSLPLEKAKKRKKRKIEKKEVVKVRKKQIKRDPAEPKIDRRRKPFLNDDLNETLFTITDLTFEEQVAEIEKRRDSANYKNAVFKCTECYKGFLDEDAYNTHMTRHTTQCGEHSCEICKTHFKHSHALRKHITAHHTQRFSCRQCPYVTTHRQTARLHERWHQGTKYRCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSIKGIELHKKLKHRLEDGQVPEDGPFCELCNVRFVSIEAHRRHLNVSGRHADKEGREANKPKKGRKSKEIKEREKRCREKSRESEEKRKVYPSQLRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTKYPSMKSPCMCEVCGRMFQSYALLKDHTWVHTGERPFKCDACDKSFRMKQRLVAHRRVHSQMKVSYACTLCGKNFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYGMLPPGPPGTDMDGVQPIWPPCDPKMTDMNMIEDKPMYYTLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00429076;
- 90% Identity
- iTF_00429076;
- 80% Identity
- iTF_00429076;