Basic Information

Insect: Deilephila porcellus
Gene Symbol: RREB1
Assembly: GCA_905220455.1
Location: LR999993.1:5673519-5678224[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.031 2.3 9.2 1.7 2 23 85 107 84 107 0.95

2 12 0.22 16 6.6 0.1 1 22 139 160 139 160 0.94

3 12 0.019 1.4 9.9 0.1 1 23 286 308 286 308 0.97

4 12 0.001 0.077 13.9 0.4 1 23 317 339 317 339 0.99

5 12 0.00064 0.048 14.5 2.0 1 23 345 368 345 368 0.97

6 12 0.0026 0.2 12.6 1.7 1 23 710 733 710 733 0.96

7 12 0.00022 0.016 16.0 1.3 2 23 929 950 928 950 0.97

8 12 0.022 1.6 9.7 5.3 1 23 956 979 956 979 0.97

9 12 0.072 5.3 8.1 1.8 1 23 1012 1036 1012 1036 0.93

10 12 0.69 51 5.0 0.1 1 19 1060 1078 1060 1083 0.80

11 12 0.0016 0.12 13.3 0.2 2 23 1123 1144 1122 1144 0.96

12 12 0.015 1.1 10.3 5.0 1 23 1150 1172 1150 1172 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.031	2.3	9.2	1.7	2	23	85	107	84	107	0.95
2	12	0.22	16	6.6	0.1	1	22	139	160	139	160	0.94
3	12	0.019	1.4	9.9	0.1	1	23	286	308	286	308	0.97
4	12	0.001	0.077	13.9	0.4	1	23	317	339	317	339	0.99
5	12	0.00064	0.048	14.5	2.0	1	23	345	368	345	368	0.97
6	12	0.0026	0.2	12.6	1.7	1	23	710	733	710	733	0.96
7	12	0.00022	0.016	16.0	1.3	2	23	929	950	928	950	0.97
8	12	0.022	1.6	9.7	5.3	1	23	956	979	956	979	0.97
9	12	0.072	5.3	8.1	1.8	1	23	1012	1036	1012	1036	0.93
10	12	0.69	51	5.0	0.1	1	19	1060	1078	1060	1083	0.80
11	12	0.0016	0.12	13.3	0.2	2	23	1123	1144	1122	1144	0.96
12	12	0.015	1.1	10.3	5.0	1	23	1150	1172	1150	1172	0.97

Sequence Information

Coding Sequence: ATGTTCGTAATCAATTGTAACATGTACTCTTTTGTTACAGAAATCAAAACAGAGGACATCAGCGAGGCGAAAATTGAAGCCGAGGAAATGGATAGAATGAAAATTGAACCGCAGGAGTTGCGCGTGCGGACTACCAGTATCGACAGCGACAACAGGTCGGACAGAAGCGACGAGGAGGACCGGAGGGCGCGCAAAAGGGCAGCGTCTTCCTCCCCATCCCCATTCCCAATGGACAAGAGAATCGCGCGTTTGGAGTGCCCCAAATGCAGACAGCGGTTCGACTCGCACAACGCGTACAACATCCATCGCTTTACGGTCCACGGCGACGACCGGTCGGGCTACGAAGACTACGACTTCCCCGGTAAACGCGTCCCTGAGATCATGAGGAACTCCCAAATGCTACCGGAACAGCGCTACCGCTGCGACTCATGCTCCAGAGAATTCCCAAGCGTCACGGCATTGGATATCCACAAAAAGACTTGCACAGTGCGATTAGCAAGCCCTGAACGCATCAGACGAGAGGATTTCTTTCAAAAACTAGATCTTACTAACAGGAACTTTTCAATTCCTGGCACGCTAACCCCACCGATGGAGAGATTTGCGCCTAAGTTCGAAGATGCACATCTGGCCACAAATGGCATGCGTCATATGGACCCCGCGCGGGATTTGGCAGATATCCAATCCATATTGAATGTAACTTCAGCGGGCAGCCTTTTGGAAAGACTGACGGGCACTAGAGTACCTTTGGAAAGCACTGTGTTGACACCGCCCGACACTATTGGCAAAGAGAGGGAGCCCGAAGAAACGCAAGACAATTTCGCAGCGGAATTTAGAAGGATGAAGTTACGAGGAGAATTCCCTTGCAGATTGTGTCCGGCGAAGTTCCCAAATCTCAGAGCTTTGAAGGGACACAATAGAGTGCACCTCAGCGGGACTGGACCTGGTCCGTACCAATGCAACATGTGCCCCCACGCCTCTCTCGACAAGGCGGCGCTTGTGAGACACATGCGTACCCACAATGGAGACCGTCCGTACGAATGCGCTGTTTGCAATTATGCGTTCACTACGAAAGCTAACTGCGAAAGACATTTGAGAAACCGCCACGCTAAAGTAACGCGTGAGGATGTGAAGCGCTCGATAATATACCACCCATCAGAAGACCCTAATAACGACGAGGTCAATTCTAAACTCGCTCGGGATGACGTGAAGAGGTCGTTGGCTTTCCACACCCCTGACGTAGATCGAAGGAATGACACAGGGCGTAACACACCCCTCACTCACTTCACACCAAGCTTCATTACAGAGAGGCATCCAGTAGCATCTCTCGTTACTAAGCCAATACCTGAAGCCCCCATAACTACTAGAGAACCAGAACAGCCTATTCCAAGAATAAAAGTGAAAGGCATTGGGCAACTGACCCAAATACCAGAGTTCAGACCGCCGGAGGTAACATACAAACCTAACGACGTTCAAACAGACACTTACGATGAAGAAGCTCCAGTGGATCTGAGTACGAGTGACAACAACAGTTGCGATGTATTAGACTTAAGTAAAAAGAAACGTGACGCTGAAGAGGAGCCTAAGGCACCACCACGTCCCTCTTTCGAACCAGACGCAGCTGCGGCTGCCGTATCAGCGTTCGAGAAGACAAGTCTTTTGTTAGCTCAACAAAGATTATTTGAATCTTCCTTTCCAAAAATAGATCCTGCTTACTACGCTACGCATCTTTCTCAACTATACGCGGGTACCGTGTCCGGTCTCCCGGGCCTCCCGATCACGCCGTCCTTTCCTTACTTTCTTCAGCCCCCGTTTTTTCCTAACCCATCCGATTCACAAGAACTTGCCGAAATAAAGCAACGCATTCATAAAGAAATCATTCGCAGCTTAAGCATGTCTGGTGGGAGGTTAGTTCCTAACGAACAGGAAGCTCAGCCAAAGCAGGAGTCGGAAGAAGAAGAAGTGAAGCCTCTACCGCAGTCAGTGTCACCCGCACTTTCCCCGCACACCGAATCTCCACGGCCACTGAGCAACAATCTCGTACCGCAGACGGATTCCGTAAAAATGGTGATAAAAAACGGTATACTCATGCCTAAACAAAAGCAAAGGCGTTACCGTACCGAAAGGCCATTCTCTTGCTCTCAGTGCACAGCTAGATTCACTCTTCGCTCAAACATGGAACGCCATGTGAAACAACAGCATCCTCAGCATTGGAGTGTAAGGAGACCAGCGCCTAGAGCCCCACCGCCGTACCCTACCCCAGACACACTCGCTGATCGCGTCAAATTTGCTCTTTTGGCCCGTCATTTGGAACGTCCATTACAACAACCCGAACGCTCGCCAGTCCGTCGTGATTCTGACGAAGTTGCTGACAACGAAGAGGATGAAGACGATACCCTAGTTATTGACGAGGAACCGGAGCAAGACATGAAGCCCGAAGAACGTACAGCGGCTCACAGAGCGGCTGCCGAGATATTAATGGCGACTTGCCAACAAGAAATGAACAAGGATTTTGACCTTAAAATTGCTGGGAATTTAATTAACAAACCCATCCCGATCCCTACGGATAAGACTGAGGGTGGGACTGATGGTGTTCAGACAGCTGGTCAAGAGTCGCTACCGGTTCCTGTGGTACCGGCGCGCAGTGATGAGGAAGAAGATGAAGAGGGTTTGGTGGCCTCCACTAGCGAAGGGAATAACTCCGGAAGCGATGAAAATAAATCGGAGTCAGACACAACACAGCCACCGAAAAAGAAGTCTGCCTACAGCCTGGCGCCGAACCGCGTGTCCTGCCCGTATTGTCACCGCAAATTCCCGTGGTCGTCGTCGCTCCGTCGCCACGTATTGACCCACACCGGGCAGAAGCCGTTCAAGTGCCCGCACTGCCCCTTGCTCTTCACCACCAAGTCTAACTGCGACCGCCATTTACTGAGGAAACATGGGGGTTCTGCGAGAGCTATATTAGCTGAGCCAATCCCTGACGCGATCTCACCACCTCAACCTACCAATGATATCCGCACCGTCCCGGAACGGCCGTATAAATGCTCCTCATGCCCAACCAGTACATTCTCCTCCATGGAGACGTTGAAGAAGCACATGTCTTCGCGCCATGGTACTGACTCGCAGCCAGGATCTCCTAACCCTGAGATCACTGATGATAACTCCGACTGCAGTCTGGTGTTCAAGTGCCATTTGTGTGAAGCCTCGTTTGGGGACAGGACCGCCGCGCTGGGCCATTTGGGGGCAGTGCATGCTACGGAGTATGAACAGCTAGTAAACAAGGGCGCTTTGGACGCAGCCAGTGACCGTAGCGAGAGTGCTGATGATGATGAAAGGGGAAAGTTCCCTGATCACGCTAATAGAAAGGTGGTATGCGCGTTCTGCGTGCGTCGCTTCTGGTCAGCGGAGGACCTGCGCCGGCACATGCGCACGCACTCGGGCGAGCGGCCCTTCGCCTGCGACCTGTGCACGCGCCGCTTCACGCTCAAGCACAGCATGCTGCGCCACCGCAAGAAGCACCGCGAGGAACTCACCGATGATGAGGACCACACCCCGCCCCACACCCCGGCTGACGGACTTGCTAATGGCTTCCGTTACCAAGACGACGACGGCTCCGGCAACGAGATCCCGAGCAACGTGAACAACAACAACTCCCCGCCCTCGGGACCCTACGAGAAGAAACTCAAGCTGGATATGACGTCGCGCAAATATTCCTCGGAGGCCGACAACGACGCAGAAAACGGCACCGACCTCATCGGAAAACTGCTCGGAATCCCCGACAAGACCATCAACAAGCTACTCTCCTCCGCCGACGAGGCCGCCAAAATCCTTGGCGTGAACAAATGA
Protein Sequence: MFVINCNMYSFVTEIKTEDISEAKIEAEEMDRMKIEPQELRVRTTSIDSDNRSDRSDEEDRRARKRAASSSPSPFPMDKRIARLECPKCRQRFDSHNAYNIHRFTVHGDDRSGYEDYDFPGKRVPEIMRNSQMLPEQRYRCDSCSREFPSVTALDIHKKTCTVRLASPERIRREDFFQKLDLTNRNFSIPGTLTPPMERFAPKFEDAHLATNGMRHMDPARDLADIQSILNVTSAGSLLERLTGTRVPLESTVLTPPDTIGKEREPEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDDVKRSLAFHTPDVDRRNDTGRNTPLTHFTPSFITERHPVASLVTKPIPEAPITTREPEQPIPRIKVKGIGQLTQIPEFRPPEVTYKPNDVQTDTYDEEAPVDLSTSDNNSCDVLDLSKKKRDAEEEPKAPPRPSFEPDAAAAAVSAFEKTSLLLAQQRLFESSFPKIDPAYYATHLSQLYAGTVSGLPGLPITPSFPYFLQPPFFPNPSDSQELAEIKQRIHKEIIRSLSMSGGRLVPNEQEAQPKQESEEEEVKPLPQSVSPALSPHTESPRPLSNNLVPQTDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCTARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDTLADRVKFALLARHLERPLQQPERSPVRRDSDEVADNEEDEDDTLVIDEEPEQDMKPEERTAAHRAAAEILMATCQQEMNKDFDLKIAGNLINKPIPIPTDKTEGGTDGVQTAGQESLPVPVVPARSDEEEDEEGLVASTSEGNNSGSDENKSESDTTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDAISPPQPTNDIRTVPERPYKCSSCPTSTFSSMETLKKHMSSRHGTDSQPGSPNPEITDDNSDCSLVFKCHLCEASFGDRTAALGHLGAVHATEYEQLVNKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCTRRFTLKHSMLRHRKKHREELTDDEDHTPPHTPADGLANGFRYQDDDGSGNEIPSNVNNNNSPPSGPYEKKLKLDMTSRKYSSEADNDAENGTDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490512;
90% Identity: iTF_00291015;
80% Identity: -