Dpor004977.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999996.1:628975-630767[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.3e-06 0.00025 21.7 2.7 3 23 173 193 171 193 0.96 2 10 0.00037 0.028 15.3 0.0 1 23 198 221 198 221 0.95 3 10 0.015 1.1 10.2 1.6 2 19 227 244 226 249 0.89 4 10 0.0037 0.27 12.1 0.5 3 23 254 274 253 274 0.97 5 10 0.36 27 5.9 1.8 2 19 278 295 277 298 0.76 6 10 6.6e-06 0.00049 20.8 0.8 1 23 309 332 309 332 0.97 7 10 0.0011 0.082 13.8 0.3 2 23 339 360 338 360 0.95 8 10 5e-05 0.0037 18.0 1.8 1 23 366 388 366 388 0.98 9 10 0.044 3.3 8.7 0.6 1 23 394 417 394 417 0.93 10 10 0.0007 0.052 14.4 3.0 2 23 423 444 422 444 0.97
Sequence Information
- Coding Sequence
- ATGCAAGAAGTAGAAGTAATCCTGCCTGCATTGAAATATCTGACGGGTGACACTGAACATATTTGTAGGTTATGTTTTGCTTCTACCGAAGTCTCCGAGATATCTATAGAAGATACTACGAGGCTCCAACAGCCGTATATTGATGAAACGGTGACGTTTGTGGACATGTTCCAGGAATTAGGGGTGGCACCAGAAGTTGATCTACCTCAAGTATTGTGTTCTAATTGTGCTACAATGACTATGAACTCGTATCTATTTCGTAAGCTTTGCCAGTATGCAAATGAGAAGTGGAATGAAGCAATAACTCAGTTTGATAAAACACTGGATCAGTCCAATACTGTAGCTCCCAACGTACAAACAGTATACTTGATGCTACACAAGAACGAAAATCTTATGTTTACAAGCAAAAAAAGTCATACATTGAAGAGTAAAAAAACAGCATTAGCAAAAATCAAAGACATACTTAAAAGTAGGGAAACATATGTAAAAGTGCGACAGAAATCATCTAATATCATATGTGAGGAGTGTGGGGAAAGATTTAAATCTAATTGCCACTTGGTAAAACATATGAAGGTGCATAGCAAAACACAGTATCCATGTCCACAATGTGCTAAGGTATTCGCATCTCAGCTACAACTCGAAGAACATGCGGAAAGAGTGCACTATCCAAAACATATTCAGTGTCCAAAGTGTGCCAAAATGTTTAGCACTGACAAAATGCTCAAGTACCATGACAAACTGCACCATATTGCAGCAATATGTAAATTGTGCTTTGTACAGTTCCCATCTAGGAAAGATTTAAGAGCACATTTAGACAAACATGAAGTGAACAAGTGCCCTCTTTGTGAAAAGTCCTTCCTCAATAAACATACATACAAGTTCCATTTAAAAATATGTGGCAAGACTGATGAGAGACAGCCTAGTTTCTTCTGTGACATATGCAGCAAGGGGTATGCACGTAAAAGTGGGCTGCGGACACATTTAAAGACTGATCATGGGTTTGGTAATGTACTCTCATGCAACTGGTGTGGCAAAAAGTTTGATGCTATCAGTAGATTGAAAAATCATATTGTCAAACACACTAAGGAGAGAAACTATCACTGTGAACATTGTGGCAATAAGTTTGTGACTCAAGCTGCCTTAGTTTATCATATCAGACTCCATACAGGTGAAAGACCGTTCCCCTGTGACATGTGTGGAGAGAGTTTCCTATCCGCTTCACGAAGGATGGAGCATAAGAGGCGGAAACATTTTGGACCAACTAAGGAATGCCCAGTTTGTCATGTGAAATTTGTAACTGGGCATCAGTTAAGAAAGCATGTGCAAAGGCATTACAACCCCCACAGTAAACTATTTGTACCTGAAGCAGATATTTTACACTCAAACAATGTAACTGTTTCAAATGTGAAAGGACAGGAATATTCAAAAATTGCAAATTTGTTGACTATGTAG
- Protein Sequence
- MQEVEVILPALKYLTGDTEHICRLCFASTEVSEISIEDTTRLQQPYIDETVTFVDMFQELGVAPEVDLPQVLCSNCATMTMNSYLFRKLCQYANEKWNEAITQFDKTLDQSNTVAPNVQTVYLMLHKNENLMFTSKKSHTLKSKKTALAKIKDILKSRETYVKVRQKSSNIICEECGERFKSNCHLVKHMKVHSKTQYPCPQCAKVFASQLQLEEHAERVHYPKHIQCPKCAKMFSTDKMLKYHDKLHHIAAICKLCFVQFPSRKDLRAHLDKHEVNKCPLCEKSFLNKHTYKFHLKICGKTDERQPSFFCDICSKGYARKSGLRTHLKTDHGFGNVLSCNWCGKKFDAISRLKNHIVKHTKERNYHCEHCGNKFVTQAALVYHIRLHTGERPFPCDMCGESFLSASRRMEHKRRKHFGPTKECPVCHVKFVTGHQLRKHVQRHYNPHSKLFVPEADILHSNNVTVSNVKGQEYSKIANLLTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00787967;
- 90% Identity
- iTF_01430238;
- 80% Identity
- -