Dpor016831.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999998.1:4979467-4982474[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.2e-05 0.0068 17.2 1.5 1 23 66 89 66 89 0.95 2 10 3.3e-05 0.0025 18.6 3.0 2 23 97 119 96 119 0.94 3 10 0.2 15 6.7 5.1 2 23 127 149 126 149 0.95 4 10 0.0034 0.25 12.2 4.9 2 23 157 179 156 179 0.95 5 10 0.00082 0.061 14.2 7.7 1 23 186 209 186 209 0.96 6 10 0.016 1.2 10.1 6.1 1 23 215 238 215 238 0.93 7 10 9.2e-05 0.0068 17.2 0.3 3 23 247 267 245 267 0.97 8 10 0.0019 0.14 13.1 2.0 2 23 275 297 274 297 0.96 9 10 8e-05 0.0059 17.4 3.4 2 23 304 326 303 326 0.94 10 10 2.5e-05 0.0018 19.0 3.6 1 23 336 358 336 358 0.97
Sequence Information
- Coding Sequence
- ATGGAGGCTGTATCTACATCTAAGGACCCAGAGGTCATGTCAGACCAAGCAAACCCGGACATAAAAAAACCAAAAGAAGAGGTGATAAAATTTGTCAGCGTGACCAGCGAGATTTTGACAGAAGAACAGAGACAAATGTATGAATCAGTGCTGGCTACATGGAAACCTGTGTTATTCCCCAAACGAATCAAGAGATACATATGCCCAAAATGCAGTAAGGAGTTCAAAAATTACCAAAATCTCTACCTTCACACTACAAGAGTGCATTCGTCTGAAGAATCAGCTGTTATGTGTGACATTTGTGACAAAACATTTAAGAATAAGCATTACTTATACATGCATCGAATGAACAAACATTACTCTGAAATGGAGAAGTGCTACTGTCAGTTCTGTCTTCAAGAGTTCCGGACAAGGAGAGCGTTGCACCTCCATGTCAAACGGATTCATCCGAACACTCTACCGGAGATAAAATGCCATGAATGTGGGAAAGAGTTTCATGCTCCGTACAAGCTTAAATATCACTTGGAATCCTGTCACAGATCGGACAAGGACAAATATAAATGTCACATTTGTCATAAATTATACAAAAATCACTTGAATCTGAATCGTCATTTGCAACTCCAACATGCACCGGTAGAAAGACATCCCTGTGTGTTTTGCTCGATGACCTTCAAGTCAAGACATCACATGAAACGGCATGTTTTAAACATCCACCCTCCGTTGGAATCTAAAGTTAACTGTCCTGAATGTCTGAAAGAGTTCAAAAACGACCAATATCTTAAGGAGCACATGCAAGTCCATTCTTCAGCTGATTCTAAAGTCAAATGTGATTTGTGTGACAAATATTTCCATTCGGCTGTCCGTTTGAAGAAGCATAAGAAAATTGTCCACCCAACAAAGCCTAAATTGAGATGTGAAAAATGTGATAAAGAGTTTGCTCACGCGCATTATCTAAGACGCCATAATAATTCGGTTCATGTTGAAATCGATGAAAATAACTATGAGCACGAATGTGATCAGTGTGGAAAGAAATTTAAACTAAAGAAATATTTGAATAATCACCTAATTAGGCATGAACAGCAGCAATTAAAAAGGATTTCTCAAATGGTCAAAACTGTAATGGATGATGGGAAAGAAGTGAAAGTACCGAAAAAACGTGGAAGACCGCGAAAAGCCCGCGCGGAAATTGAGTTTATCAAGTGTGAGCCGGTTTCCAGCACCGATTCGGAATCTGGGGAGACCGATTCTGATTCGGAGTGA
- Protein Sequence
- MEAVSTSKDPEVMSDQANPDIKKPKEEVIKFVSVTSEILTEEQRQMYESVLATWKPVLFPKRIKRYICPKCSKEFKNYQNLYLHTTRVHSSEESAVMCDICDKTFKNKHYLYMHRMNKHYSEMEKCYCQFCLQEFRTRRALHLHVKRIHPNTLPEIKCHECGKEFHAPYKLKYHLESCHRSDKDKYKCHICHKLYKNHLNLNRHLQLQHAPVERHPCVFCSMTFKSRHHMKRHVLNIHPPLESKVNCPECLKEFKNDQYLKEHMQVHSSADSKVKCDLCDKYFHSAVRLKKHKKIVHPTKPKLRCEKCDKEFAHAHYLRRHNNSVHVEIDENNYEHECDQCGKKFKLKKYLNNHLIRHEQQQLKRISQMVKTVMDDGKEVKVPKKRGRPRKARAEIEFIKCEPVSSTDSESGETDSDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01316630;
- 90% Identity
- iTF_01010704;
- 80% Identity
- iTF_00428440;