Dpor015465.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999970.1:4556754-4578201[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.3 3.2e+02 2.5 7.4 1 23 106 134 106 134 0.92 2 11 4.5e-05 0.0033 18.2 1.3 1 23 140 162 140 162 0.98 3 11 6.1e-05 0.0045 17.7 1.7 1 23 168 191 168 191 0.96 4 11 0.088 6.5 7.8 3.3 1 21 197 217 197 219 0.95 5 11 9.1e-05 0.0067 17.2 2.7 1 23 225 247 225 247 0.99 6 11 2.5e-05 0.0019 19.0 5.5 1 23 253 275 253 275 0.98 7 11 0.0045 0.33 11.9 0.5 1 23 283 306 283 306 0.96 8 11 0.0044 0.33 11.9 4.5 2 23 313 334 312 334 0.96 9 11 0.002 0.15 13.0 3.0 1 23 340 362 340 362 0.98 10 11 4e-06 0.0003 21.5 4.5 1 23 368 391 368 391 0.96 11 11 1e-05 0.00076 20.2 3.0 1 23 405 427 405 427 0.97
Sequence Information
- Coding Sequence
- ATGGGCGGGCAGGAGCCGAACGTGTTGATGGAGACTGCCACGGACACGTTCCAGACGGTCACGCTGGTGCCTTCAGACGCTACCAATGGAGAAGTGAGCTACGTGCTCGTCGTGCAAGAAGACACCAAGCCGCTTCTCAACATCGATGTCAAAGTTGACCACGAGGACTCGGAGAAGCCCAACGGCGATGTGTACAACTTCGAAGATGAAGACGCGCCCGGCGAGGAAGAAGAAGAAGAAGAAGTGGAGGACGCGGACGGCCGAATCCGGCTGAACAGCATGAGCAGCAAGCGTCTCAAGGCACAGCGGCCCAATTTCACCTGCAACTTCTGCTCCTATACCAGTCACAGGCGGCAGCGCTATATACACAGGTACCTACTACTCCGCCACATGAAGTCTCACTCGGAGGACCGGCCGCACAAGTGCCAGGTGTGCGAGCGCGGGTTTAAGACCATCGCCTCGCTGCAGAACCACCTCAACATGCACAACGGAGTCAAGCCGCATGTCTGCAAGTACTGCAACAGCCCGTTCACCACCTCTGGCGAATTGGTGAGGCACGTACGCTACAAGCACACGCACGAGAAGCCGCACAAGTGCACCGAGTGTGAATACGCGTCCGTCGAGCTGTCTAAGCTACGTCGCCATGTGCGCTGCCACACCGGCGAGCGTCCGTACCAGTGTCCGCACTGCACGTACGCGTCGCCGGATACGTTCAAGTTGAAGCGCCACTTGCGCACGCACACCGGCGAGAAGCCGTACAAGTGCGAGCACTGCAACATGTGTTTCACGCAGTCCAACTCGCTTAAAGCTCATAAACTCATACACAACGTGTCGAAGAAGCCGGTGTATGCATGCGAGTTGTGCCCCGCGAAGTGCGGCCGCAAGACGGACCTGCGCATCCACGTGCAGAAGCTACACACGTCCGACAAGCCGCTCAAGTGCAAGCGGTGCGGCAAGTCCTTCCCCGATAGATACTCCTGCAAAGTGCACAATAAGACACACGAAGGCGAGAAGTGTTTCAAATGCGAGCTGTGTCTGTACGCGTCCACCACGCTGCGCCATCTCAAGTCGCACATGCTGAAGCACACGGATGAGAAGCCTTTCACGTGCGACCACTGCGATCAGTCCTTCAGGCAAAAGCAGCTCTTACGCAGACACCAAAACCTATACCACAATCCGGACTATGTGCCAAAACCGCCAAAGGAGAAGACGCACACGTGTCGTGAATGCAAACGCACTTTCGCACATAAGGGGAACCTCATCCGACATCTCGCGGTCCACGATCCAGACTCCGGACACCAGGAAAGAGCTCTCGCACTCAAGATCGGACGCGAGAGAAAGATCAAGATAGTCGACAGCGATATAATCAAGGAGTACCGGCCCGACTCAGAGGAGAGCAGCGAGCACCAGCTGTTGAAACTGGGGTTAGCATCAAACGAGCTGAAGCGTGGCGAGCTGGTGACGGTGGCGGACAGCGACGGCCAGCAGTACGTGGTGCTGGAGGTGATACAGCTGGAGGATGGCACCGAGCAGCAGGTCGCCGTCACCTCCCACGACTTCCTGCAGGAGGAACAAGAGGAGGAGGAAGAGGAGGAGGAGGAAAATGATGACGACGAAATTAACAAGGAAGAGGAGGAGATAGACAAGGAGTTGCTGAAGGCCCACGTGATTCAGAAGGCGCATGAGCGCCGGATCAAACTTGAAAAGGATGTCGACTCCTGCTTCGGATTTGACGAAGAAGAAGACGACGACGAAGAGGAGGTCGAGGCGGAAGATGACGAGACTTTTGACGAGAAGATGGTGTTGCATTTGGTATAA
- Protein Sequence
- MGGQEPNVLMETATDTFQTVTLVPSDATNGEVSYVLVVQEDTKPLLNIDVKVDHEDSEKPNGDVYNFEDEDAPGEEEEEEEVEDADGRIRLNSMSSKRLKAQRPNFTCNFCSYTSHRRQRYIHRYLLLRHMKSHSEDRPHKCQVCERGFKTIASLQNHLNMHNGVKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCTECEYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHKLIHNVSKKPVYACELCPAKCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSCKVHNKTHEGEKCFKCELCLYASTTLRHLKSHMLKHTDEKPFTCDHCDQSFRQKQLLRRHQNLYHNPDYVPKPPKEKTHTCRECKRTFAHKGNLIRHLAVHDPDSGHQERALALKIGRERKIKIVDSDIIKEYRPDSEESSEHQLLKLGLASNELKRGELVTVADSDGQQYVVLEVIQLEDGTEQQVAVTSHDFLQEEQEEEEEEEEENDDDEINKEEEEIDKELLKAHVIQKAHERRIKLEKDVDSCFGFDEEEDDDEEEVEAEDDETFDEKMVLHLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01430156; iTF_00428397; iTF_00290930; iTF_00787902; iTF_00820339; iTF_00819430;
- 90% Identity
- iTF_00428397; iTF_00820339; iTF_00819430;
- 80% Identity
- -