Basic Information

Insect: Deilephila porcellus
Gene Symbol: -
Assembly: GCA_905220455.1
Location: LR999998.1:1707582-1715968[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.67 50 5.0 0.2 1 16 51 66 51 68 0.86

2 12 0.004 0.29 12.0 0.8 1 23 226 248 226 248 0.98

3 12 0.0014 0.1 13.5 1.5 1 23 255 277 255 277 0.98

4 12 0.3 22 6.1 2.3 1 23 281 304 281 304 0.73

5 12 0.38 28 5.8 0.7 1 23 311 333 311 333 0.98

6 12 0.0041 0.3 12.0 3.8 1 23 338 360 338 360 0.95

7 12 3.7e-06 0.00028 21.6 0.5 1 23 366 389 366 389 0.97

8 12 0.00056 0.041 14.7 2.4 1 22 394 415 394 419 0.93

9 12 0.00069 0.051 14.4 0.1 1 23 427 450 427 450 0.93

10 12 3.9e-05 0.0029 18.4 0.9 1 20 456 475 456 479 0.94

11 12 1.4e-06 0.0001 22.9 0.9 2 23 487 508 487 508 0.98

12 12 0.062 4.6 8.3 0.8 5 23 517 536 514 536 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.67	50	5.0	0.2	1	16	51	66	51	68	0.86
2	12	0.004	0.29	12.0	0.8	1	23	226	248	226	248	0.98
3	12	0.0014	0.1	13.5	1.5	1	23	255	277	255	277	0.98
4	12	0.3	22	6.1	2.3	1	23	281	304	281	304	0.73
5	12	0.38	28	5.8	0.7	1	23	311	333	311	333	0.98
6	12	0.0041	0.3	12.0	3.8	1	23	338	360	338	360	0.95
7	12	3.7e-06	0.00028	21.6	0.5	1	23	366	389	366	389	0.97
8	12	0.00056	0.041	14.7	2.4	1	22	394	415	394	419	0.93
9	12	0.00069	0.051	14.4	0.1	1	23	427	450	427	450	0.93
10	12	3.9e-05	0.0029	18.4	0.9	1	20	456	475	456	479	0.94
11	12	1.4e-06	0.0001	22.9	0.9	2	23	487	508	487	508	0.98
12	12	0.062	4.6	8.3	0.8	5	23	517	536	514	536	0.87

Sequence Information

Coding Sequence: ATGAATGAAGAAAAAGATTTTGATTTGTTAAACAGCATTAAACCGTGTTGGACTTGCCTCCGCACAGCGGCCGATGTGTCGCTCATGACGTTAGAGGAGATATCAATGTACAAATCGTTTGTTCAAAAGGAGCAAAATGAAGACCCAATGTACATCTGTGTCTATTGCAAATGGATTTTTAAGAAATTTGCCAAACTTATGCAGCAGTGGAGAATGGCAAATAAAATCCTTTCTGAACACATAAAAATGGACACAAAAGCATTATTAAAACCACTACATAAGTTTGAGTGTGTAACAGAATTTCATTACCTGGGACCCGAACCTACTCTCTCTGAGGCAGATGTCAGTGATGACAATGATGCTGATGAAATGCCCCTCATCTTGCTAAGTTTACGAGAATCCCGAGAGAGTATCCGGAAGAGGGAACGGAAAAAGGAAACGACAAATTTAGAGCTACAACAGGAAATTAAACAAGAAATAGAGATTAAAGAAGAGTTCCCTATAGACCCAGTATCCGGCTCAAAGGACCAGAAGCGGAAGGCAATAGCCCAAGATGGCTTCACGTCGAGAATGGTTCGAGAAACGAATGAATATGTTGTTATTAAACTTACTAGAGAACAGGTTTTGGAAGAAATGCAAGAGAAATCAAAGAGTGAGTCATACCAACGCGCTGCTTTCAAATGCGAAGATTGTGTGAAAGGATTCAATTTTAAGGAAGTGCTTGATACACACAGAGAAAGGCATTCACCGGAACACGGGGCGTTTGTATGTGATATTTGCCACCAGTACTGTCCCACTGCGGTGTCATTGAGGGGCCACATCAAATCCCACACGACCAGATATAAATGCAAGATATGCGGGTACATTCGCCTCTCCCGCCAACATTTAATGGATCATCACGGAATATCCCACACCAGTGATAAAGCTACCTACAGATGCGATTCCTGCCCGTTTATCACTGACAAGCGTACAGTAATACAGCGTCACGTTAAAACGCATTCTACGGAGCGGCACGCGTGCCACCAGTGCGGGAAACTGTTCAAAAGCATCACAACACTGCGGGTGCATTCATTGCGCCATGACAAGTCCCGGTACTATCCTTGCACACAATGCGACAGGACCTTTATGTATCCATCGGCGTTGAAAAAACACACGGAAACGGTGCATGAGAGAGACGATTATTACTGTGTGGAGTGTGATGTCAAGTTCAAATCCCCGGAAACTCTAAAGCATCATTTTAGAAGAGCGAAGAAACATCGCGACACTTCTTCTTATAAATACGCGTGCGATATATGCACCTCTCGGTTCATAACCTCCTCCGCGTTACAAGCTCACGCCTACTCCGCGCACGGGGTGGGCAGCGCGCACACATGTACGATATGCTCTCGCTCCTACTCCAGCCGGGACACGCTACGAGCTCATATGTGGAGGGCCCATGCTAGGAGGGAGCAGCTACCCACGTGTGGTGTCTGTGGGAATAGCTTCTCGCGAACTACCTCACTGAAAGCGCATATGCGCACGCACGCGCGCGGGAAAGCGCACGTTTGTACGTGCGGTGCGTCGTTCGCGCATCCTGCTACTTTACGCGCGCACAAAGCTGACAAGCATTCACAGAAAGAAGAATTACCAAAACCAATAGGAACGGAAAACGGTTCGCTCGAAATATGA
Protein Sequence: MNEEKDFDLLNSIKPCWTCLRTAADVSLMTLEEISMYKSFVQKEQNEDPMYICVYCKWIFKKFAKLMQQWRMANKILSEHIKMDTKALLKPLHKFECVTEFHYLGPEPTLSEADVSDDNDADEMPLILLSLRESRESIRKRERKKETTNLELQQEIKQEIEIKEEFPIDPVSGSKDQKRKAIAQDGFTSRMVRETNEYVVIKLTREQVLEEMQEKSKSESYQRAAFKCEDCVKGFNFKEVLDTHRERHSPEHGAFVCDICHQYCPTAVSLRGHIKSHTTRYKCKICGYIRLSRQHLMDHHGISHTSDKATYRCDSCPFITDKRTVIQRHVKTHSTERHACHQCGKLFKSITTLRVHSLRHDKSRYYPCTQCDRTFMYPSALKKHTETVHERDDYYCVECDVKFKSPETLKHHFRRAKKHRDTSSYKYACDICTSRFITSSALQAHAYSAHGVGSAHTCTICSRSYSSRDTLRAHMWRAHARREQLPTCGVCGNSFSRTTSLKAHMRTHARGKAHVCTCGASFAHPATLRAHKADKHSQKEELPKPIGTENGSLEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00819438;
90% Identity: -
80% Identity: -