Dpor021396.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_905220455.1
- Location
- LR999994.1:8167768-8180574[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.065 4.8 8.2 2.2 1 23 253 275 253 275 0.98 2 11 0.93 69 4.6 5.7 1 23 282 304 282 304 0.97 3 11 4 3e+02 2.6 0.1 1 10 308 317 308 331 0.72 4 11 5.9e-05 0.0044 17.8 6.1 1 23 338 361 338 361 0.95 5 11 9.9e-05 0.0073 17.1 0.2 3 23 369 390 367 390 0.96 6 11 0.00013 0.0093 16.8 3.0 2 23 404 425 400 425 0.95 7 11 3.8e-05 0.0028 18.4 0.8 1 22 431 452 431 456 0.94 8 11 0.00027 0.02 15.7 1.5 2 23 465 487 464 487 0.95 9 11 2e-07 1.5e-05 25.6 0.5 1 23 493 516 493 516 0.98 10 11 7.9e-06 0.00058 20.5 2.2 1 23 525 547 525 547 0.98 11 11 0.00045 0.033 15.0 0.3 1 23 553 576 553 576 0.97
Sequence Information
- Coding Sequence
- ATGGAAGCCGTCATAGAAACAATAGATATGTATTGTTATGGCTGTTTGAGTAATAGCAGTGAATTAAATGGTTTACATCAGTACAATTTAAAAAATGGGCCACTTCAAACTCTTTTGCAGGTGGACTACCTTAATTTGTGTTATGTTTGTAAAAGGTTGGCTCAAAAAGCAGACAGCTTCATTCAGAATGTGCAAAGCAATCAAATATTAATGGAAAACTTTCACAGTATGATGGATGTCACTCTTCAAGCAGTTAGAAGTCAAATACATCCACTACTCAATTTGACCCAGGTTTCCCTGTGTGCCATAGAGTTTTTGGACAAAGGCGAAGTTAAACTTGAAACGGTGGGCAATGACCTCGTTGGAGAATTCTTTCAGAAAGAAGATGATTCCTTAGACATACCAGAGGATACAAATATGGAAAATATAAAAGTTGAAATGAAGGAGGAAGAGGGAGATGCAATTGATGATTTCATAGATGACCATGATAATGATGGTGACTTCGACAACACATATTACAAGGAGGACACATTCCAATTGCAAGAACTGCTGAAAGAAGAAGTGGAAGTGGAGGAAATAGACCTTATTAACCTTGAGAATAGTTTGAAACAGGCTAAAACTAAGAAAAAGAAGAAAAGTAAAATCAAACTAAATGGTCAAGATGTTCCCCTAATAGAAAAAGTATACTTAACAAAGAAGCAATGCTTAGAAGAACGGGAGAGGATGGCCCAGGATTCCAAGTACATTAACTCGACATACCAATGTGTGGATTGCATCAAAGGCTTCCACTTCAAACCGAGCTTTGATAGACACATGGAAAGACACAGTGAGAGTATGGGAGCCCATCGGTGCGACGTTTGCAAACAGTGTATGGAAACGGAAGAGAAACTGACAAATCACAAGAAATATCATTTTGTACGATACAAATGTGCAGAGTGCGGTTTGATGCGCAACGGTCGTCTTACAATCAGGGATCACTACACGGCTATACACTGCCCTGGATATTATCAGTATAACTGTCCTCATTGCCCGAAGACTTTCAAGCGTCAAGTATCAATGAGGAAGCACGTATGTTACTTCCATAGGAAGAAGGAGCGAGTTATCTGTGCTTACTGCGACAAAAGCTATGCCAACAAGGACGTACTCAAAGGCCATATGATGAGGAGGCATCCAAAGAAAGTGTCAGCCGGTGAGAAATGCAAGCGTTGTGTGTGTCAGGAGTGTGGTATGGCGTTCGTCTCACCTTCACAGCTGAAGAGTCACAGCCTCAAACACACACACAGTCGGAACTACTACTGCGTCGAGTGTAATAAGAATTTCAAGTCAGACTCAACGCTCAAACAACATTTAAAGACTGCATTACCTCACATTAATTACATAGATTTACCATTACCATGTTTGCATTGTAACAAGAGGTTCGCGATCAAAAGGGATCTTGAAAGGCACACCAACAGGGTCCATTTGAATCTGAGGCCTTATAAATGTGACATATGTGATAAGTCGTACGTAACGTCGTGGAACCTAACGGCCCACAAGCGAGTCACACATGAAGGTTTCAAGCGGCCGTTGAAATTCTCCTGCCCTATGTGCGACAAAGTGTTCGATCGAAACCACATACTAAAAACACACCTTCGTACTCACACTGGTGAGAGGCCATATCAATGCAGTAAATGTCCAGCACAGTTCAGCCAATCTGGAATACTCAATACGCATATGAAGCTAATACACCTTAAATTAACCAGGGATGGAAGACCTAAGGCGCTGGTAAAGAAATAG
- Protein Sequence
- MEAVIETIDMYCYGCLSNSSELNGLHQYNLKNGPLQTLLQVDYLNLCYVCKRLAQKADSFIQNVQSNQILMENFHSMMDVTLQAVRSQIHPLLNLTQVSLCAIEFLDKGEVKLETVGNDLVGEFFQKEDDSLDIPEDTNMENIKVEMKEEEGDAIDDFIDDHDNDGDFDNTYYKEDTFQLQELLKEEVEVEEIDLINLENSLKQAKTKKKKKSKIKLNGQDVPLIEKVYLTKKQCLEERERMAQDSKYINSTYQCVDCIKGFHFKPSFDRHMERHSESMGAHRCDVCKQCMETEEKLTNHKKYHFVRYKCAECGLMRNGRLTIRDHYTAIHCPGYYQYNCPHCPKTFKRQVSMRKHVCYFHRKKERVICAYCDKSYANKDVLKGHMMRRHPKKVSAGEKCKRCVCQECGMAFVSPSQLKSHSLKHTHSRNYYCVECNKNFKSDSTLKQHLKTALPHINYIDLPLPCLHCNKRFAIKRDLERHTNRVHLNLRPYKCDICDKSYVTSWNLTAHKRVTHEGFKRPLKFSCPMCDKVFDRNHILKTHLRTHTGERPYQCSKCPAQFSQSGILNTHMKLIHLKLTRDGRPKALVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00428379;
- 90% Identity
- iTF_00428379;
- 80% Identity
- -