Dpor003577.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- L
- Assembly
- GCA_905220455.1
- Location
- LR999972.1:9185600-9190063[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.53 39 5.4 5.8 1 23 3 25 3 25 0.97 2 16 4.7e-06 0.00035 21.2 5.1 1 23 31 53 31 53 0.99 3 16 2.2e-05 0.0016 19.1 0.1 1 23 59 81 59 81 0.98 4 16 3.2e-05 0.0024 18.6 0.1 2 23 96 118 95 118 0.95 5 16 0.82 60 4.8 0.2 9 23 149 164 145 164 0.96 6 16 0.32 23 6.1 0.1 3 23 217 237 216 237 0.97 7 16 6.2 4.6e+02 2.0 0.0 3 13 252 262 251 264 0.86 8 16 0.001 0.076 13.9 0.9 1 23 280 303 280 303 0.91 9 16 0.027 2 9.4 0.1 1 23 308 331 308 331 0.92 10 16 0.0039 0.29 12.1 0.3 1 23 389 413 389 414 0.94 11 16 0.00017 0.012 16.4 0.1 2 23 476 497 475 497 0.96 12 16 0.049 3.6 8.6 0.0 1 23 505 527 505 527 0.98 13 16 0.22 16 6.6 1.6 2 23 535 556 534 557 0.94 14 16 0.39 29 5.8 0.6 1 23 631 653 631 653 0.94 15 16 0.0029 0.22 12.5 0.1 1 20 661 680 661 683 0.95 16 16 0.085 6.3 7.9 0.3 1 23 690 712 690 712 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTTCGCTGCGAGTTCTGTTCTCGTCTGTTCAAGCACAAGAGGTCTCGCGACAGACACGTCAAGCTACATACGGGAGATCGCAAGTACCGCTGCTCCCACTGCGAATCTGCCTTCTCCAGGAGTGATCATCTGAAGATCCACATGAAGACGCACGACAACCAGAAGCCGTTTCAGTGCACGGTGTGCAACCGCGGGTACAACACGGCGGCGGCGCTGACGTCGCACATGCAGGGCCACAAGCGCGACCGCGAGGGACGCGACGAGCGCCGCCGCCCGCTGCGCTGCCTGCGCTGCGGGGAGCCCTTCCGACACCCGGACCTGCTCCAGGCTCACATGGCGAGTGCGCACGGCGTGGACGCAGCCGCTATTACGCCGCCGCAGCGCGTCGCTTCGCAGCCACCGCCCACGCTACTCGCCTGTATCTACTGCACTCGAGACACCTTCACTAGCATGGAGCAGCTACAATTACACGTCAGGACGGCCCACTCGGCATTGTTAAATGGCGAATCGCCTTTACAAGGCATAGATCAGCCGGCACCCACGGATCTCAGCAGACGAGCTACCGAGGACGGCCCCGCGGTGAAGCGGCCGCGGTCAGGCTCCGGTACCCCTCAGACTACTTTGTCGCCCAGCACTCTGCTGTGTAACCAGTGCGATGCGGCCTTGCCCGACTTCGAAGCATTCCGAACTCACTTGAAAGCTCACATCGAGGAGGGCGGGGAGTTGACTAGGTCGAGCCCGGCTCCCTGCGTGCACTGCGGCTCTACATTTGCGGACGCCGCAGCCTCCGAGCGTTACCTGACCGCGCACTACCTGGCCGTCTCGTGCGAGTACTCGTGCCACAGCTGCGCTCGCAGCTTCTCCGCGCCTGACGATCTACAGAAACATCTTTTTGATCTGCATGCTCACCATCTATACCGTTGTTCTCTTTGCAAGGAGATATTTGATTCCAAAGTGGCTATACAAGTACATTTCGCGGTGGCCCACAGCGGCGAGAACAAGGTGTGGGTGTGTCGGTCTTGCGGCGCGGGCGCCGGGCCGCTGCGCTCGGAGGGCGAGGGCGCGGCGCACGTGCGCACGCGGCACGCGGCGGGCGCGGCGCGGTGCGCGTGCGGCGCGCTGCTGGCCGGGCCCCGCCACGCGCGCCCCACCCGGCCCTACCGCTGCCCCGCGCCCGCCTGCACCGACACCTTCGCCGTGCAGTACCTGCTCGAGAGGCACATGCAGATGCACCACACCATACCCCATCAGGTTTTAAATGGTGAAATAACAAGAGCAAAACGCATTGAAAATAATAACGGTGGTGAAAGCGTGGACGAGGCGTGCTCTCCCTGCATCACGGGATCGGACAACGCCGGCGTGAGTACCGCCCCGGGAGGCAGTGAAGAGCGGCGGCGGAAGAACGGTGCGGTGGCGCTGCAGTGTGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCCGAGCTGGAGGCGCACACGCGCGCGCACTCCGGTGCCGCCGCCGCGCGACACAAGTGCCTCATCTGCGACGAAGTCCTGCCCTCGGCCGCGGTGCTCGCCGAGCACAAGCTTACTCATTGCAAGGTGGTGGCCGGAGATACATGTTCGCGATGCCGTGCTCGGCTTTCCTCGGAAGAATCGTTTTTGAACCATATGGCTCGTCATCATCCTGCACTGCCGGCACCATGCGTCGTTTGCAGGCAGACCCTGGCATCTGAAGCTGAAGCGCGACTGCACGCGCGGTTCCACCTGCGTCCCAGTGAGGACGAGCAGCGTTGTGCAATTTGCCTGCGTGCCCTTCCCGAGGGTGAGGCTGGAGACGGCGCAAGGGCCTGTTCCGCGTGCTACGCGCGACACGCGGCGCCGCGCCCGCCACCTCCCGCCGATCACGACTGTCGACTGTGCCGCCGTACTTTAGGCTCGCCCACAAGACTACAAGCACATCTCATTGAGCACACATTTGCCGGTATCGGAGCGTTCACCTGTTATTTGTGTTCAGCAGTGTTCACAAGCGCAGCTGGTTTGCAGCGACATTTGCCGGAGCACGCGTCTGCTCCGCGACCTTACGACTGTGGACGCTGCGGCCTCAAGTTCTTTTTCCGAGCGGAATTAGACAATCACGCCTTCGTTCATTTGGAAGAGGCAGAGATAGCCCAGCGAGCGTTTTATGAGGCGTATGCGAGAGGAGCGGCCACCGCTTGGGCAGCGCTCGCGCCACCTGAGGTCCCAACGGCCTTGCCTGCCCCGGGTCCTCCACCACCCGAAGTGAAACAGGAGCCCAAGATCAAAGAGGAAAGGAATGATGAGTATATCGAGGTGTCATCGCCTCCCCCCGCGGCGCCGCCGCCCGCGCCGGCCCCCGCGGCGCCCGCCCCGCCGGCCGTGGTGAAGCAAGAAAAGCCCGACGAAGACTGA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCSHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRDERRRPLRCLRCGEPFRHPDLLQAHMASAHGVDAAAITPPQRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRTAHSALLNGESPLQGIDQPAPTDLSRRATEDGPAVKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRTHLKAHIEEGGELTRSSPAPCVHCGSTFADAAASERYLTAHYLAVSCEYSCHSCARSFSAPDDLQKHLFDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGPLRSEGEGAAHVRTRHAAGAARCACGALLAGPRHARPTRPYRCPAPACTDTFAVQYLLERHMQMHHTIPHQVLNGEITRAKRIENNNGGESVDEACSPCITGSDNAGVSTAPGGSEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCSRCRARLSSEESFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPSEDEQRCAICLRALPEGEAGDGARACSACYARHAAPRPPPPADHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALAPPEVPTALPAPGPPPPEVKQEPKIKEERNDEYIEVSSPPPAAPPPAPAPAAPAPPAVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00341544;
- 80% Identity
- -