Dpor014043.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- gtf3a
- Assembly
- GCA_905220455.1
- Location
- LR999978.1:10176700-10178274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 10 7.4e+02 1.3 2.4 2 23 206 228 203 228 0.86 2 10 5.2e-05 0.0039 18.0 0.7 1 23 234 256 234 256 0.99 3 10 0.00054 0.04 14.8 8.6 1 23 262 285 262 285 0.97 4 10 0.0025 0.18 12.7 0.0 2 20 292 310 291 311 0.94 5 10 1.5e-06 0.00011 22.8 2.1 2 23 332 353 331 353 0.96 6 10 1.2e-06 8.9e-05 23.1 2.3 1 23 360 382 360 382 0.98 7 10 7e-05 0.0052 17.6 0.3 1 23 388 410 388 410 0.97 8 10 6.1e-06 0.00045 20.9 2.1 1 23 416 438 416 438 0.96 9 10 2.2e-05 0.0016 19.2 2.2 1 23 444 466 444 466 0.98 10 10 7.8e-05 0.0058 17.4 2.7 1 23 472 495 472 495 0.97
Sequence Information
- Coding Sequence
- ATGTCCGAAGACGACGGGACATTTTGTCGCCTGTGTGCCGAGCCCACGCCAAGAACTCAGCTTATATCGCCACTAGAAGACGTTGGCATCAATTCTAAGATCGCAGCAAAAATGCAGTGGATAAACATTGATATTTCCGCGTCAACTATACTTCCAAACATGATTTGTTTCGCATGCTTCGACTCTTTAGAGCGTACTTGGATGTTTCTTCACAGTGTACGGACCGCGCAAGAGAAATTAATCGAGATTTTCGCTGAAAAACTGGGTGACAACATTGACGATAAATTGGCCTCTTCAGATGCCGGAAAACCGGTAAATAATGACTGGGAAAACTTTCAGGACACTAAAGCTGAGATAAAATCGGAGTCAGAGAACAATGAAATTGATGTTGAAGAATCTACGAGCATAATAGACATGAATTTATTGGTGAAATCTGAGAAATGTAGCTATAACGACGATGACAATAGCGAAGGCTTTAATTCTACTGACAGTGACTTGCCTCTCCAGTCAGCCACTGCGAAAACAAAGGTTAAGAAAAAGAAAAAACTGAAAAGGGCTAAAACTGACAGTCCGGAGAATCTGCTACCTTCTGTGTCTTGGGATGATTACATGTGCCGTTGTGCAAGCTGCGATGCTCAATGCAAGAATATTATGTCATTGCGACTGCATTCGTTGCAAATACACTCATGTTGCTGTACATTTAAATGTTCCGATTGTGGAAAAGTTATAACAAATTTCAGATCTTTTGTCAATCATGTCAGAATACACAAAAAGCTTCTCCGGTACTGTTGTGAGTTTTGCAACAAATGTTTCAGGATGTCTGCATATTTGAAAAAACACCGAAATACATACCACAGTGATATCTACCTTACAATGTGTCAGAACTGTGGAGCCACCTTCGAGACACCAGAACTTCTTCAAGACCATCTTGTCCTATACACAAAGAACTACAAAAAACGGTCATTAAAACAGGAGAAAATTGATCATGAATTGAAATGTAACATGTGTAATAAGGAGTTTAAATCTCGCAGTAATCTGCAGCAACATAAACTTGTTCACACAGAACGGACAAGGGACTTTTCCTGCCATGTTTGTGGCAAAATGTTCTTCACAAAAGGTACACTTAGTACCCATATGATGATCCATGAAGATACAAAACCGTTCAAATGTGAATTCTGTCCAATGGCTTTCCGAGCTCGTGGCAACTTACAATCTCATATAAGCCTACACTCTGGAGCGAAGCCATTTGTGTGCGAACAGTGCGGAAAAAGTTTTCGTGTGAAAAGACACTTAAAATCTCATTCTATAGTACATACAGACCTTATGCCTTACGTTTGTGACTACTGCAATAAGCCTTTTAGGTTTAAGACGCGTTTAAATCTCCATTTGAGGCAACATACTGGTGCTAAACCATATAACTGTGTGCTTTGCCAGAGAGACTTTACAAATGGCTCAAATTTTAAAAAGCATATGAAAAGAAGACATAACATTGATACTTCAAAGAAAAGATACAATAATGTTGTTAATGAAAATGCAGATCAAGCGTCTGCTGATGAGGCAGTTAATCAATCATGA
- Protein Sequence
- MSEDDGTFCRLCAEPTPRTQLISPLEDVGINSKIAAKMQWINIDISASTILPNMICFACFDSLERTWMFLHSVRTAQEKLIEIFAEKLGDNIDDKLASSDAGKPVNNDWENFQDTKAEIKSESENNEIDVEESTSIIDMNLLVKSEKCSYNDDDNSEGFNSTDSDLPLQSATAKTKVKKKKKLKRAKTDSPENLLPSVSWDDYMCRCASCDAQCKNIMSLRLHSLQIHSCCCTFKCSDCGKVITNFRSFVNHVRIHKKLLRYCCEFCNKCFRMSAYLKKHRNTYHSDIYLTMCQNCGATFETPELLQDHLVLYTKNYKKRSLKQEKIDHELKCNMCNKEFKSRSNLQQHKLVHTERTRDFSCHVCGKMFFTKGTLSTHMMIHEDTKPFKCEFCPMAFRARGNLQSHISLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYVCDYCNKPFRFKTRLNLHLRQHTGAKPYNCVLCQRDFTNGSNFKKHMKRRHNIDTSKKRYNNVVNENADQASADEAVNQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359096;
- 90% Identity
- iTF_00428376;
- 80% Identity
- -