Dpor000537.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999993.1:7297953-7308332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.01 0.74 10.8 0.1 5 23 358 376 357 376 0.97 2 12 0.033 2.4 9.2 0.0 3 23 384 404 383 404 0.95 3 12 7.3 5.4e+02 1.8 0.3 2 22 412 431 411 433 0.68 4 12 3.7e-06 0.00027 21.6 1.3 2 23 439 460 439 460 0.98 5 12 0.00012 0.0089 16.8 1.5 1 23 466 488 466 488 0.98 6 12 0.018 1.4 10.0 0.3 1 20 492 511 492 513 0.93 7 12 0.0002 0.015 16.1 0.1 1 23 546 569 546 569 0.95 8 12 0.012 0.93 10.5 0.1 3 23 578 598 577 598 0.98 9 12 1.5e-05 0.0011 19.6 0.4 1 23 609 631 609 631 0.98 10 12 7.1e-05 0.0053 17.5 4.5 1 23 637 659 637 659 0.98 11 12 0.00035 0.026 15.4 0.5 3 23 667 687 665 687 0.98 12 12 1.3e-05 0.00093 19.9 0.8 1 23 693 716 693 716 0.96
Sequence Information
- Coding Sequence
- ATGGAGATGGAAACTTCGTGGTCTAATTTCTGTCGGTGTTGCTTGTCGGCTGATTCTGAAGTGTCACTTTTAGACACAGAGGAAAATATTAGAGAGAAGTTTCGGGAAATAACCACTATTAAGGTTTGTCCTGATGATGGTCTGCCACAAAAGCTGTGCACAGAATGCTACTCCATAATGTTATCAGCTTATCAGTTCCGTAAGCAGTGCATCAAGATGGACTCTGAACTACGATTACAACTCAACACTATACTGAGCCAGTCCAGAGAGAAGTCTTTAGAAGAACTTATCCAAGAAGCAGTAACCTATGAGGAACCTACAGAAGAAGAGATAGCCAATGACCCAATGAAACAATTACAAGCTATTATCAAACAGGAACCAACAGATAGTGATGATGATGATTATTACTATGTTGTGGTCATTGATGACCCTAAGGATAAGGATTCAAAAGAGAGAGAGGTGCCACCACAAACTAACATCAAGAATGAACCAGAATTTATTTTGCCCCATCAGGATATTAACATGCCTAAAATAGTAGAGGAACCACAATACAGTCACAACCATTTTCATAAAACCATTGACGATTTTTTAATGTCTAACACAGTGCCTGCGAATGTACCTGCAACTATACTGCAGAATGAAGAGGAGTGCCAAGATGATTTGGAAACTATGAATGTAGAAGAAATTCAAGACAATACATCACAAGATGAAAACCTACAACACATTGCAGGGGATAGAGTAGAAGAAATCATTGGAGACATGTCACATAATGTAACAACAACAACAACTCAACATCCGAAAAACTATTTTAAAATATTAACATCAACAAATTCTGATGATACTATAGTGTTGAAAAGCAATGATGACATACAATATTTAGCTGACGCACAGGTAGTAACAAATGAGAATGAAGATGGAGATGCCATGGACCAGGAAGTTATTCTTTGTGAAGGAGATGAATCATCACAATTCCAAATAGTGAAATATGATGGATCAGAACTTGTCATAGAGTATGCTGATGATGGACAAATAGCTACAGTATTGCAACAAGAAGATGGCACATTTCTCTGTGACTGCGGAGAGCAGTTTGATGATTTAGCCGAGTATGAGAAGCATCAAAACAAACATAATCCTGCTGGTGAAAACTTGTGCAATTTGTGTGGCAAAGGGTTTGAGTCACCAGAAATCTTAGTAGGTCACATGCTTTTACATAAATTCACAGGTGCTTTAATTACTTGCCCTTACTGTAATCAATTAATTAAGAGGACTACAATCACGCAACATATCAAATATGCACACAATAATATTAAGCCACGGTGTAATATATGCTTGAAGACTTTTGCAAATACAAATAATTTGAAACGGCATATGATGATCCACAGTGGGATCAGAGAGTTTGAATGTGATATCTGTTTCAAAAGATTCAGTCAAAAAATCACGATGCAAACACATCGGCTGATACATATGAACCCATTTAATTGCAACAATTGCGACAGTGACTTTGAAAGCAGAGCGGAATTGACGCAGCACAAGGAGTCTGGAGAATGCACACGGTCCAAAGTAATGAAAGTCAAGGAGGAGTTAATGAAGACTATCAAGCAGGAAGTGACCACAAATCTCGGCAAACTCCTGGGTTACGCCTGCTCCCTGTGTAAGAAAATGTTTTCAGTAGAATCTGCATTGGAACAGCATGTAGAGATAACACACATAGTTGATCCTTCCGAGTTGCTATGCTCGGAATGTGGCGAAGTACTACCGTCGAAGAAAGATATGCAATTGCATGTATTATCGCATAAAAACATGAAGCCAAAGAACATTAAGAGATTTGAATGCAGTATTTGTGGTAAGAGCTGTGCTAGTCAAGCGATGCTGCTTATGCACGAAAGAGTGCATACGAATGAAAGGCCTTTCCCGTGCCAGCTTTGTTCGTTGCGGTTTAAAACCAAAACGCATTTGAGAACACACCAGCTGACTCATACTAGAGAAAAGAAATTCGGCTGCTCGATTTGTATGAAATTCTTTTCGCTCAAAGGGAATTTGATAGTACATTTACGGACCCACACGGGGGAGCGCCCCTATGTGTGCTCAATTTGCGACGAAGCTTTTATAGACTCCAAGTATCTTAAAAAGCATAAATTAAAGAAACACGCAATAGACAACGTGCCGTGGAATCATTACTAG
- Protein Sequence
- MEMETSWSNFCRCCLSADSEVSLLDTEENIREKFREITTIKVCPDDGLPQKLCTECYSIMLSAYQFRKQCIKMDSELRLQLNTILSQSREKSLEELIQEAVTYEEPTEEEIANDPMKQLQAIIKQEPTDSDDDDYYYVVVIDDPKDKDSKEREVPPQTNIKNEPEFILPHQDINMPKIVEEPQYSHNHFHKTIDDFLMSNTVPANVPATILQNEEECQDDLETMNVEEIQDNTSQDENLQHIAGDRVEEIIGDMSHNVTTTTTQHPKNYFKILTSTNSDDTIVLKSNDDIQYLADAQVVTNENEDGDAMDQEVILCEGDESSQFQIVKYDGSELVIEYADDGQIATVLQQEDGTFLCDCGEQFDDLAEYEKHQNKHNPAGENLCNLCGKGFESPEILVGHMLLHKFTGALITCPYCNQLIKRTTITQHIKYAHNNIKPRCNICLKTFANTNNLKRHMMIHSGIREFECDICFKRFSQKITMQTHRLIHMNPFNCNNCDSDFESRAELTQHKESGECTRSKVMKVKEELMKTIKQEVTTNLGKLLGYACSLCKKMFSVESALEQHVEITHIVDPSELLCSECGEVLPSKKDMQLHVLSHKNMKPKNIKRFECSICGKSCASQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSICMKFFSLKGNLIVHLRTHTGERPYVCSICDEAFIDSKYLKKHKLKKHAIDNVPWNHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00290911;
- 90% Identity
- iTF_00428367;
- 80% Identity
- -