Dpor001759.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999971.1:17043186-17048277[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0071 0.53 11.2 0.5 1 21 69 89 69 90 0.95 2 29 2.2 1.6e+02 3.4 0.1 2 23 118 139 117 139 0.94 3 29 0.67 49 5.0 0.3 2 23 161 182 160 182 0.93 4 29 0.2 15 6.7 0.1 1 23 186 208 186 208 0.94 5 29 0.0044 0.33 11.9 0.2 1 23 213 236 213 236 0.87 6 29 0.017 1.3 10.1 1.3 1 23 242 265 242 265 0.95 7 29 0.012 0.91 10.5 1.0 1 23 272 295 272 295 0.90 8 29 0.035 2.6 9.1 1.2 1 23 374 397 374 397 0.96 9 29 1.2 91 4.2 0.2 2 23 424 445 423 445 0.94 10 29 7 5.2e+02 1.8 2.2 1 23 467 489 467 489 0.94 11 29 1.1e-05 0.00083 20.1 1.1 1 23 493 515 493 515 0.98 12 29 0.069 5.1 8.1 0.5 1 20 549 568 549 572 0.85 13 29 0.013 0.99 10.4 0.1 3 21 581 599 579 600 0.90 14 29 0.37 27 5.8 0.4 1 23 649 671 649 671 0.93 15 29 0.17 12 6.9 0.4 2 23 697 719 696 719 0.92 16 29 0.042 3.1 8.8 2.2 1 23 741 763 741 763 0.98 17 29 0.00033 0.024 15.5 3.3 1 23 767 789 767 789 0.98 18 29 0.0066 0.49 11.4 0.1 1 23 794 817 794 817 0.90 19 29 0.018 1.4 10.0 1.8 1 23 823 846 823 846 0.96 20 29 0.74 55 4.9 1.3 1 19 897 915 897 916 0.92 21 29 9.9 7.3e+02 1.4 0.1 2 23 943 965 942 965 0.93 22 29 4.8e-05 0.0036 18.1 0.1 1 23 987 1009 987 1009 0.98 23 29 0.00012 0.0092 16.8 1.1 2 23 1014 1035 1013 1035 0.95 24 29 0.0039 0.29 12.1 2.3 2 23 1042 1063 1041 1063 0.97 25 29 0.00088 0.065 14.1 3.4 1 23 1069 1092 1069 1092 0.97 26 29 0.0048 0.35 11.8 0.2 1 23 1098 1121 1098 1121 0.96 27 29 0.0071 0.53 11.3 1.5 1 23 1127 1149 1127 1149 0.95 28 29 1.4e-05 0.001 19.8 3.9 1 23 1155 1177 1155 1177 0.98 29 29 0.0003 0.022 15.6 0.1 1 23 1181 1204 1181 1204 0.97
Sequence Information
- Coding Sequence
- ATGAGAATTGATGAAACTTTTCTATTTTTAGGGAAACGCAGACTTACAACCGATGAGAATATTAAAGTTGAGACAAATATAGAGCAGAAAAAAGAGACATACAAAAGAAGCGCTCGCACCATAGCCAGGATAATCACAAAGAAAAACGCCGAGGCCATACTCGCGTGTTGGAATCTCTGTCCGTTCAGGTGGAAGAAAAACCGATTCAAGTGCGCTTACTGCGAAGAAAACTTCACTGAGTGTGGTCTGTTGAGGGCACACGTGAAGCTGTGCTCCACGCGGCACACCGTCGTGGATATTTACAGCAAGTTTAAAGAAATGCCATTAATCAATGTCGATGTGGTTGGAAGTGTTTGCGTGTACTGTGCCGTCCCGTTCAATGATGTGAAGCAAATGCGAGACCATGTCACACAACATGGCTTTGATTTCGATTACAACCATCCCGACGGAGTGCTTCCCTTCATTCTTGACAAGGACTGGAAATGTATAATATGTGAGATGCAATTCAACAACTTTTTAAAATTGTACGAGCACATGAATGTACATTACCAACACTATATATGCGCCACGTGTGGTAAGGGTTACATGACGGGTCCTAGGTTAAGGAAACATTCTGAAGTTCATATAAGTGGCTCCTTCCCTTGCAATGAGTGTGGAAAAGTGTTTACTATGAGAGTAGCGAGAGATTCCCATAAAGCAACGGCGCATTCGAAAGGACCGCGGTACGAGTGCCCTCATTGCAGCATGAGGTTCAAGGGGTATTATGACAGGATGGAACATCTGAAAGAAGCTCACAGCCAGAGCGAGGTCTCATATCGATGTGTCCACTGCAAAATGTCGTTTAAAACGAGCGGCAAGCGAGCGGCGCATGTTTCAGCTGTCCATTTCCCACCTGAGTACGATTTCGATTGTTCCGCCAATGACGCGGAGTTAGGCATTAAGCGCGGTAGGAAATTAAAGGAAGTAGTAACAGCGCGCCAGATGCGCAGGCGACGGCGCGCCAACAACGAGCTGCCTGAAGAATCAGAAAAGCGCATCGCCAAAACCATGATGCGGCGGAACGCTATGACTATCCTAGAATGTTCCACAGCGTGGGCCTTTAGATGGTTCCACGGCGCGTTTTACTGTTCCTACTGCGAAACTAAATATGTAGACATACACCCGCTAAGAGAACACGTCCGCTTGAACCATTTAAATCAGGCGCCTACGAAAAAGATATTCGCCAAGTTAACTGAAAACAATATGCTCAAAGTAGACGTAGCTGATCTTAGTTGTAAATTATGCAATCGCCTCGTAAACGGATTAACATCTTTGAAAGAACATTTATCAGCCCATAACAGACCTTTGTATACTGATTACAGCGACGGAGTTCTTCCTTTTAAGCTTGACGATGACGGTTTCTACTGTCAAATTTGTTTCATTCACTTTCTTAATTTTGCACGGGTCAACGAACACATGAATAGTCATTATCAGAACTACATTTGCGACACGTGCGGCAAAGCGTTTGTTTCGAAATCTCGATTTAGAAAACACGTGCAATCTCACGAGAAAGGAAACTTTCCTTGCGGCTCGTGCAGTGAAGTTCTGGAGACGCGAGCCGCGAGAATGTTCCATAGGTTGCGAGTGCATCGCAAGGGCGTTAGGTACACATGTCCTAGATGCCCTGAAATGTTCACCTCGTATCATGTAAGAGTACGCCACCTGGTAGACGTTCACGGGCAGCAGAAGATAGAATATGGCTGTGAAGTTTGTGGGAAAACATTCGAAACCAGCTCCAAACGCGCGGGACACTATCGATTGAATGAAGATTCGAAGAATTCCGAAGATAGCCCGATTAGGATTGTGTGGAAGCGCAAGAGGGGCGTTCTGATCGAGGACAAGGCAAACGCCGCAATAATTCTAAAGTACTCTAACGCCGTGGTGTTCAGATGGCAAAGAGGAAAGTTCATGTGCGCGTATTGCCCGCAGATGTGCACGAACGTAGCCGCAGTGCGCTCACATTCCACAATCCATAGCAACAAACTTGACATATTTGAGAAGCCTGAAGTACGCAACTCTTTTCCTCTTAGAGTCGACATAACTGATTTATCATGCGATTTATGTAATAAGAGAGTGCACAGTATAGATGGTTTGAAAACACATTTGGCTCAAGCACATTCCCATACAACAAATCCAAAATATACGGACGGGGTGATACCTTTTGTTCTCACTGGAAAGGAATTTAAATGTGTACACTGCGGTACACAATACGAGGGTTTCATGAAGCTCTTCATTCACATGAACAATCATTATCAAAGTTTTATATGTCACATATGTGGTAAAGGATATTCTGCGAAGCATAAGTTGAGTGCTCACAGAAAGAGCCACGAGTTGGGCGAGTTTCAATGTTCCAAGTGCGACATGGTGTTTCCGAGTCGACCTGCTAAAAATAGGCACGTGGCAGCGGCGCATGCGCGAAAAGAGAAGTATAGATGCCCTCTGTGCGATGAGTATTTCGACTCGTACCATTCGAGATTGCGACATTTGGACAAGATTCACGGACAGAAAACCGAGTACAAATGCAGCTTGTGCTCCGCGCATCCGACCGTAAAATGGCGGCCGAAGATCAAATACTCGGACCACAGGCATAATGCGGCAATAATTATACAGAACTCAAACGCCTGTCCATTTAGATGGACACCTGGGAAGTACAAATGCGCGTACTGTGAACTAACGTTTGGTGATTGTCACGGGGTCAGACTACATTGGCCTGATCACGCGAACAGAATCGAGTTTCTGAAATTTGCTCGTACCTACACTAAAACGAAAGTAGAAATCACTGACTTGAAATGTGAACTTTGCATGCAAAGTATGACCAATGTGGAAACGTTAGCTGAGCATTTGATGGTTTTGCATGATAAGCCTATTAGGAAAGAATGTGGTTTAGGTGTTACGCCGTTCGTGATGAAGGATGGGAGTTATATTTGTGCGTACTGTGATGCTAGTTTCGTGGTATTTAGCGGTCTTAATGCCCACATGAACACACACAGTCCGAGCTGTATTTGCTCGACATGCGGCAAAGCATTTGCTACTATGCAAAACCTTAAATCACATCTTGTCATGCATGACGTTAATTCTGATCTAAAGTGTCGAAAATGCGACGAAGTGTTTGCAACAAAAGATTTGAAACATATTCATATGTCTAAACACGCGATTCCGCGGCCTTACAAGTGCCCCTATTGCAACGAAGCCTTCAAAAATTACAACCATAGAAGAATGCATTTGGAAAGAAATCATGACAAGAAGGTGGAGTATCCTTGTTCACTGTGTCCTGCTGTGTTCTCGATGAGCGACAGACGGACGAAGCACATGCGAGACGTACATATCAAGCAGAAGACCTTCCTCTGCACGTATTGTTCGCAGAAGTATCTGACAGCGTCTAGTTTGAAAAGACATTTGCTATCACACACTCGAGAGAGAAACTATCATTGTGAAATTTGCAGTAAGAGTTACAAAAAATACGAGAACCTTAAACAGCATATGAAGGTGCACGGAGAGAGGTTCGTGTGTGAGGTGTGCGACGAAAGATTCTCTTTGAGGGTGACTCTTGTAGCACACTTGAAGAGCCAACATCCCGATGTAAAAAAGTAA
- Protein Sequence
- MRIDETFLFLGKRRLTTDENIKVETNIEQKKETYKRSARTIARIITKKNAEAILACWNLCPFRWKKNRFKCAYCEENFTECGLLRAHVKLCSTRHTVVDIYSKFKEMPLINVDVVGSVCVYCAVPFNDVKQMRDHVTQHGFDFDYNHPDGVLPFILDKDWKCIICEMQFNNFLKLYEHMNVHYQHYICATCGKGYMTGPRLRKHSEVHISGSFPCNECGKVFTMRVARDSHKATAHSKGPRYECPHCSMRFKGYYDRMEHLKEAHSQSEVSYRCVHCKMSFKTSGKRAAHVSAVHFPPEYDFDCSANDAELGIKRGRKLKEVVTARQMRRRRRANNELPEESEKRIAKTMMRRNAMTILECSTAWAFRWFHGAFYCSYCETKYVDIHPLREHVRLNHLNQAPTKKIFAKLTENNMLKVDVADLSCKLCNRLVNGLTSLKEHLSAHNRPLYTDYSDGVLPFKLDDDGFYCQICFIHFLNFARVNEHMNSHYQNYICDTCGKAFVSKSRFRKHVQSHEKGNFPCGSCSEVLETRAARMFHRLRVHRKGVRYTCPRCPEMFTSYHVRVRHLVDVHGQQKIEYGCEVCGKTFETSSKRAGHYRLNEDSKNSEDSPIRIVWKRKRGVLIEDKANAAIILKYSNAVVFRWQRGKFMCAYCPQMCTNVAAVRSHSTIHSNKLDIFEKPEVRNSFPLRVDITDLSCDLCNKRVHSIDGLKTHLAQAHSHTTNPKYTDGVIPFVLTGKEFKCVHCGTQYEGFMKLFIHMNNHYQSFICHICGKGYSAKHKLSAHRKSHELGEFQCSKCDMVFPSRPAKNRHVAAAHARKEKYRCPLCDEYFDSYHSRLRHLDKIHGQKTEYKCSLCSAHPTVKWRPKIKYSDHRHNAAIIIQNSNACPFRWTPGKYKCAYCELTFGDCHGVRLHWPDHANRIEFLKFARTYTKTKVEITDLKCELCMQSMTNVETLAEHLMVLHDKPIRKECGLGVTPFVMKDGSYICAYCDASFVVFSGLNAHMNTHSPSCICSTCGKAFATMQNLKSHLVMHDVNSDLKCRKCDEVFATKDLKHIHMSKHAIPRPYKCPYCNEAFKNYNHRRMHLERNHDKKVEYPCSLCPAVFSMSDRRTKHMRDVHIKQKTFLCTYCSQKYLTASSLKRHLLSHTRERNYHCEICSKSYKKYENLKQHMKVHGERFVCEVCDERFSLRVTLVAHLKSQHPDVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -