Dpor001781.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Deilephila porcellus
Gene Symbol
-
Assembly
GCA_905220455.1
Location
LR999971.1:17131568-17140579[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00018 0.014 16.2 1.7 1 23 86 109 86 109 0.95
2 28 0.051 3.7 8.6 0.7 2 23 136 158 135 158 0.94
3 28 6.1e-06 0.00045 20.9 0.2 1 23 206 228 206 228 0.99
4 28 0.05 3.7 8.6 3.6 1 23 233 256 233 256 0.96
5 28 0.029 2.1 9.3 1.1 2 23 264 286 263 286 0.84
6 28 8.5e-05 0.0063 17.3 1.2 1 23 293 316 293 316 0.97
7 28 0.00066 0.049 14.5 4.5 1 23 322 344 322 344 0.97
8 28 5.6e-06 0.00042 21.0 1.2 1 23 350 372 350 372 0.99
9 28 0.00045 0.033 15.0 4.0 1 23 378 401 378 401 0.96
10 28 0.0016 0.12 13.3 1.3 1 23 461 484 461 484 0.93
11 28 0.71 52 5.0 0.3 2 23 511 533 510 533 0.92
12 28 1.3e-05 0.00097 19.9 0.5 2 23 556 577 555 577 0.97
13 28 1.1 85 4.3 0.3 1 23 581 603 581 603 0.91
14 28 0.0008 0.059 14.2 6.1 1 23 608 631 608 631 0.98
15 28 0.44 33 5.6 1.3 2 23 639 661 638 661 0.90
16 28 0.0048 0.35 11.8 2.5 1 23 668 691 663 691 0.96
17 28 8.4e-06 0.00062 20.5 6.7 1 23 697 719 697 719 0.98
18 28 0.00021 0.016 16.0 4.5 1 23 725 747 725 747 0.99
19 28 0.11 8.2 7.5 2.5 1 13 753 765 753 767 0.91
20 28 0.0031 0.23 12.4 0.2 1 23 828 851 828 852 0.93
21 28 1.6 1.2e+02 3.9 0.6 2 23 878 900 877 900 0.94
22 28 0.016 1.2 10.2 2.2 2 23 923 944 922 944 0.97
23 28 0.0055 0.41 11.6 0.0 1 23 948 970 948 970 0.96
24 28 0.032 2.3 9.2 2.1 1 23 975 997 975 997 0.98
25 28 0.21 16 6.6 0.6 1 23 1005 1028 1005 1028 0.88
26 28 0.00068 0.05 14.5 1.7 1 23 1035 1058 1035 1058 0.98
27 28 1.3e-05 0.00098 19.8 3.8 1 23 1064 1086 1064 1086 0.97
28 28 1.5e-05 0.0011 19.7 2.5 1 23 1092 1114 1092 1114 0.98

Sequence Information

Coding Sequence
ATGGGAACGATAACTGACGCGCGAAAGAGCATACTCGCGATTGCGGTGTGTGCCGGACGGAATCGTCCTCCCAATAAGAACGATAAAGGACATGTTGAATCATTAGAATTAGATGCACCAAAAAATAAATCTCTTACGAAAGTACACAAGCACGATAAAAAAGAGGTGAAGGAGATTTTAAAACACCGCCATAATGTCAAAACTACACTACAATGTTCAAACGCGACTCCAATTCACAGTTTTGGTTCCACGGAATACAGCTGTTATTATTGTTCTGAACAGTTTTCTAAAGCATTTAATCTTAAAAAACATATTCTGGAAAATCACGACGAAAAAGAAAGAATCTCCTACATGCAAAACAGCACGATGAAAACATTCAGAGCGCGGTTGGACATCACATCTTTAAATTGTAGTTTATGTGGACATAGCACAGACAATCTAGAACTTCTAATGGACCACTTGACTAAACTTCACGACAAGAAAATATATAAAGACATAAAGAACCACATCATTGTATTCAAATTTGAAGATGACAATATTAAATGCGTTTTTTGTTCTCAAGTGATGGGCACATTGAAGCGCATGCGGGAACACTTAAATATTCACTATAGAAATTATGTTTGCGACGACTGCGGAGCAGGTTTCGTTAACCGAGAACATCTTTCCATCCACTTGAACACACACAAACTTGGCACGTTCAAATGTGAGCAGTGTGAAAAAGTTTTCGATACACATATGAAGAAAAAGTCTCATGAAAAATCTGTCCATTTGTTGTCACATTTGCTGCTTAAATGTAGTTACTGCGGCGAGAAGTTTCGTAACAACCAACGCAAAAGCGATCACTTGGTCAAAGTTCATGGGTTGCAACCGCGAACGTTCAAATGTGGAGCATGCGACAAAACATATAAAAGCCCCAACTCGCTGAATACTCACACGAAAAGAGACCATCTATTGGAGAGAAAACACAAATGCACCAAGTGTGATATGAAGTTCTTCCAGAATATTCAGTTGAGACAGCATATGGTTAAGCATACGGGGTCAAAGGACTTTAAGTGTCAAGTATGTGCGAAATCATTCGGAAGGAACCAAACTCTTACTGAGCACATGAGGATGCACAACAACGACAGGAGGTTTAAGTGTGATCATTGCGGACAGGCATTTGTACAGAAGTGTAGCTGGAAGGCGCATGTCAAGAACAAACATGGTGAAAGTGGGCTACCAATGCAAAAAGGACACGAAAACATTAAAGCAGCAAAGAACAATGGAAATTTTGAAGATCTTATGGGCTGTAAAAGCGAGTTACATTTACAACGAAATAATATAAGAGAAATTTTACTATGTTCGAACGCGACGCCCATCCGGCGGTACATGGGAATCGGATACACGTGTTGCTACTGCGACGAGCAATACCCACAGGCCGCGCAACTCAAACAACACACTCTCGACTCTCACCCTGATGTATACCAAGCAAACTTCATGAGAAGCATGAGCATATATGAATTCGTCATCAAGTTGGACATTACAAATCTGCGCTGTACAGTTTGTGACACTCATATGGACTCTTACAACGAGTTAATAAATCATTTAATTGAAGTTCACAAAAAGGTTATCTATACCAATGTAAAAAAACGCATATTACCGATTAAGTTCAATAATGACGTGCTGCAATGTGACATATGTGGCACAGAGTTTAACCGCTTGAAGTTTTTGATAACGCACATGAACACGCATTACAGGAATTACATATGCAAAGTGTGCGACTCCGGCTTCATCACGTACGGTGCACACAAGTTACACCTCGCCATCCACAGTGCCGGGGAGTTCCAATGCCACCACTGCTCTAAAGTATTTAATACCTCCTATAAGATGATATATCACGAGAGACGAGTCCACTCGGACAGCTTACGTCCCAACAAATGCGGTTACTGTCCAGAGTACTTTAAGGATTATCATAAAAAGATTACCCATTTATATGAGATTCATGGGATCTGCCCAAAAACTTTCTCGTGTCTCGCCTGTGACAAGTCTTTCACTTCACAGAAGCGGCTGTCTCTTCATACAAACAGGGACCATCTGATGCTTCGTCCTCACAAATGTACTGAGTGTGACAAGTCTTTCTTCAGAAAAAAGCATTTGATTAACCACATGATAAAACATTCTGGAGAACGAAACTTCCAATGTGACGTGTGCCACAAGTGTTACGGGATGAAGAAAACTTTGATAATGCATATGAGGATACATATGAATGATAAAAGGTATAAATGCGAACATTGCGGACAAGCTTTCGTGCAGAAATGCAGTGGACCACAAAGCAATAGCAACAAAATAAAAGAGAACACCTCACGTGACTCAAAAGAGGACAAAATCGATAATGGGCGTAAATTGCAACCAAAAATTGAGCTTGCTTTACATCGGAATAACATAAGAGAGATACTGTTGTGCTCAACTGCCACACCAATACAACGGTACGGTGGGATTGGATACACGTGTGCCTACTGCAATGTGCAGTATCCGGACCCCGCAGACCTGCGAGCACACACAGCACAAACACACCACGATGTCTCGCAAGCTAAATTTATGAACAAACACAATTTACATCACTATATTGTCAAGTTGGATATAACTTCACTTAGGTGCAAACTTTGCAACAGCGGTATACACACTCTAGATGACTTGATGGACCATTTGAAAAACGTGCACGAGAAGAAAATATTCAAGAATATAAAAAATAGAATACTTCCGTTTAAATTTGATAGCGAAACGATGCGCTGCGCGATTTGTGAACACGTGTTTAACACTTTCAAAAAACTGATGGAACACACCAGCACACATTATAGAAATTTTATATGCGAGGTGTGTGATGCAGGCTTTGTCAATCTCAGCGCTTTGAAAGGTCATTCGTTAAGCCACGAGACCGGTACGTTTACGTGCACGTACTGCCCGAAGATTCTGAACAACATGAGGCAGAAAACGAATCATGAAAAGACGCACCGACATGTAGATAACAAGCAGTATAAATGCGGATACTGCAGCGAAGCCTTCAATAGTGGCAGAAAGAAAGAGATGCACTTGACGTCAGTACACGGAGTACCTCAAGTTACGTACAAATGTCAGGCGTGTGATAAAACATTTAAAGTCCGCAAAGTCTTTAGAGTGCACATTAAAAGAGATCATCTCATGGAAAGAAGCCATAAATGTTCCCAATGTGATAAAAGTTTCTTCAGATCTGAACAGTTGAGGGAGCACATGGTGCGCCACACGGGGCAGAGAGAGTTCGAGTGCGGCATTTGCCTTAAAAAGTTTGGATCTAAAGGCAGTTTAAGGCACCACATGAGGAAACATAATAGTTATGATTAA
Protein Sequence
MGTITDARKSILAIAVCAGRNRPPNKNDKGHVESLELDAPKNKSLTKVHKHDKKEVKEILKHRHNVKTTLQCSNATPIHSFGSTEYSCYYCSEQFSKAFNLKKHILENHDEKERISYMQNSTMKTFRARLDITSLNCSLCGHSTDNLELLMDHLTKLHDKKIYKDIKNHIIVFKFEDDNIKCVFCSQVMGTLKRMREHLNIHYRNYVCDDCGAGFVNREHLSIHLNTHKLGTFKCEQCEKVFDTHMKKKSHEKSVHLLSHLLLKCSYCGEKFRNNQRKSDHLVKVHGLQPRTFKCGACDKTYKSPNSLNTHTKRDHLLERKHKCTKCDMKFFQNIQLRQHMVKHTGSKDFKCQVCAKSFGRNQTLTEHMRMHNNDRRFKCDHCGQAFVQKCSWKAHVKNKHGESGLPMQKGHENIKAAKNNGNFEDLMGCKSELHLQRNNIREILLCSNATPIRRYMGIGYTCCYCDEQYPQAAQLKQHTLDSHPDVYQANFMRSMSIYEFVIKLDITNLRCTVCDTHMDSYNELINHLIEVHKKVIYTNVKKRILPIKFNNDVLQCDICGTEFNRLKFLITHMNTHYRNYICKVCDSGFITYGAHKLHLAIHSAGEFQCHHCSKVFNTSYKMIYHERRVHSDSLRPNKCGYCPEYFKDYHKKITHLYEIHGICPKTFSCLACDKSFTSQKRLSLHTNRDHLMLRPHKCTECDKSFFRKKHLINHMIKHSGERNFQCDVCHKCYGMKKTLIMHMRIHMNDKRYKCEHCGQAFVQKCSGPQSNSNKIKENTSRDSKEDKIDNGRKLQPKIELALHRNNIREILLCSTATPIQRYGGIGYTCAYCNVQYPDPADLRAHTAQTHHDVSQAKFMNKHNLHHYIVKLDITSLRCKLCNSGIHTLDDLMDHLKNVHEKKIFKNIKNRILPFKFDSETMRCAICEHVFNTFKKLMEHTSTHYRNFICEVCDAGFVNLSALKGHSLSHETGTFTCTYCPKILNNMRQKTNHEKTHRHVDNKQYKCGYCSEAFNSGRKKEMHLTSVHGVPQVTYKCQACDKTFKVRKVFRVHIKRDHLMERSHKCSQCDKSFFRSEQLREHMVRHTGQREFECGICLKKFGSKGSLRHHMRKHNSYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-