Dpor000237.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999993.1:3311924-3313903[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-06 0.0014 18.6 0.4 18 43 32 57 27 59 0.91 2 2 8.1e-05 0.048 13.8 0.0 18 40 98 120 93 123 0.92
Sequence Information
- Coding Sequence
- ATGCCTACTGATTATAAACGAAAGACCGACAGAGGTATGGCGAGTCGCGAGATTTACGATCTCGAAGAAGAAGAAGTCACTTTACGAAACAAAAGTCTCCGTGAAGCGGCATCGAGTTACAACCTGAACCACACCTCCCTCCACAGGTATATAAAAAAAAAGACCGCTTATGAAGCTGACGAAACTGTGGGTGCTCCAACGATGCCCAGAAAACGTAAAAGAAAGACTACGAGAGGTGAAAGAGATATGCAGTCGTACAAAGACGCTTACGATGAAGTGAAATTAGGGGCTTCTTTAAGACAAGCTGCAGAAAAGTACGAACTATGCTATGTCTCTCTTTTGAGATATAAACGAAAGAGGGATGCAGCAGCCGAAGCTGATGATCAACAGGCTCAGAATATTACGATGGGATACGTGGCTCATAATAGAATTTTAACAATGACCAAGAGCGGGAATTATCAAAGTACCTTATACGTTGTGCTGACATATATTTCGGTCTCCCCGCAAAAGAGGTGA
- Protein Sequence
- MPTDYKRKTDRGMASREIYDLEEEEVTLRNKSLREAASSYNLNHTSLHRYIKKKTAYEADETVGAPTMPRKRKRKTTRGERDMQSYKDAYDEVKLGASLRQAAEKYELCYVSLLRYKRKRDAAAEADDQQAQNITMGYVAHNRILTMTKSGNYQSTLYVVLTYISVSPQKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -