Basic Information

Insect: Deilephila elpenor
Gene Symbol: -
Assembly: GCA_949752805.1
Location: OX457094.1:3479012-3481075[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.017 1.4 10.2 1.2 1 23 75 98 75 98 0.96

2 13 0.037 3 9.1 0.2 2 23 125 146 124 146 0.94

3 13 3 2.5e+02 3.1 2.0 1 23 168 190 168 190 0.95

4 13 3.6e-06 0.00029 21.8 0.9 1 23 194 216 194 216 0.98

5 13 0.033 2.7 9.3 0.5 1 20 250 269 250 273 0.85

6 13 0.0065 0.53 11.5 0.1 3 21 282 300 280 301 0.90

7 13 0.18 15 7.0 0.4 1 23 350 372 350 372 0.93

8 13 0.26 21 6.5 0.1 2 23 398 420 397 420 0.92

9 13 0.02 1.7 10.0 2.2 1 23 442 464 442 464 0.98

10 13 0.00016 0.013 16.6 3.3 1 23 468 490 468 490 0.98

11 13 0.0031 0.26 12.5 0.1 1 23 495 518 495 518 0.90

12 13 0.0087 0.72 11.1 1.8 1 23 524 547 524 547 0.96

13 13 0.01 0.86 10.9 0.1 1 23 553 576 553 576 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.017	1.4	10.2	1.2	1	23	75	98	75	98	0.96
2	13	0.037	3	9.1	0.2	2	23	125	146	124	146	0.94
3	13	3	2.5e+02	3.1	2.0	1	23	168	190	168	190	0.95
4	13	3.6e-06	0.00029	21.8	0.9	1	23	194	216	194	216	0.98
5	13	0.033	2.7	9.3	0.5	1	20	250	269	250	273	0.85
6	13	0.0065	0.53	11.5	0.1	3	21	282	300	280	301	0.90
7	13	0.18	15	7.0	0.4	1	23	350	372	350	372	0.93
8	13	0.26	21	6.5	0.1	2	23	398	420	397	420	0.92
9	13	0.02	1.7	10.0	2.2	1	23	442	464	442	464	0.98
10	13	0.00016	0.013	16.6	3.3	1	23	468	490	468	490	0.98
11	13	0.0031	0.26	12.5	0.1	1	23	495	518	495	518	0.90
12	13	0.0087	0.72	11.1	1.8	1	23	524	547	524	547	0.96
13	13	0.01	0.86	10.9	0.1	1	23	553	576	553	576	0.97

Sequence Information

Coding Sequence: ATGATGATGGTCAgttCCGCCAATGACGCGGAGTTAGGCATTAAACGCGGTAGGAAATTAAAGGAAGTAGTAACAGCGCGCCAGATGCGCAGGCGACGGCGCGCCAACAACGAGCTGCCTGAAGAATCAGAAAAGCGCATCGCCAAAACCATGATGCGGCGGAACGCTATGACTATCCTAGAATGTTCCACAGCGTGGGCCTTTAGATGGTTCCACGGCGCGTTTTACTGTTCCTACTGCGAAACTAAATATGTAGACATACACCCGTTAAGAGAACACGTCCGCTTGAACCATTTAAATCAGGCTCCTACGAAAAATATATTCGCTAAGTTAACTGAAAATAATATGCTCAAAATAGACGTAGCTGATCTTAGCTGTAAATTATGCAATCGTGTCGTAAACGGATTAACATCTTTGAAAGAACATTTATCAGCCCATAACAGACCTTTGTATACTGATTACAGCGACGGAGTTCTTCCTTTTAAGCTTGACGATGACGGTTTCTACTGTCAAATTTGTTACATTCACTTTCTTAATTTTGCACGGGTCAACGAACACATGAATAGTCATTATCAGAACTACATTTGCGACATGTGCGGCAAAGCGTTTGTTTCGAAATCTCGATTTAGAAAACACGTGCAATCACACGAGAAAGGAAACTTTCCTTGCGGCTCGTGCAGTGAAGTTCTGGAGACGCGAGCAGCGAGAATGTTTCATAGGTTGCGAGTGCATCGCAAGGGCGTTAGGTACACGTGTCCCAGATGCCCTGAAATGTTCACCTCGTATCATGTGAGAGTACGCCACCTTGTAGACGTTCACGGGCAGCAGAAGATCGAATATGGCTGTGAAGTTTGTGGGAAAACATTCGAAACCAGCTCCAAACGCGCGGGACACTATCgattgAATGAAGATTCGAAGAATTCCGAAGATAGCCCGATTAGGATCGTGTGGAAGCGCAAGAGGGGCGTTCTGATCGAGGACAAGGCAAACGCCGCAATAATTCTAAAGAACTCTAACGCCGTGGTGTTCAGATGGCAAAGAGGAAAGTTCATGTGCGCGTATTGCCCGCAGATGTGCACGAACGTAGCCGCAGTGCGTTCACATTCCACAATCCATAGCAACAAACTTGACGTATTTGAGAAGCCTGAAGTACGCAACTCATTTCCTCTTAGAGTCGACATAACTGATTTATCTTGCGATTTATGTACGAAGAGAGTGCAGAGTATAGAtggtttgaaaatacatttgGCTCAAGCACATTCCCAAAAAACAAATCCAAAGTATACGGACGGGGTGATACCTTTTGTTCTCACTGAAAGGGAATTTAAATGTGTACACTGCGGTACACAATACGAGGGTTTCATGAAGCTCTTCATTCACATGAACAATCATTATCAAAGTTTTATATGTCACATATGTGGTAAAGGATATTCTGCGAAGCATAAGTTGAGTGCTCACAGAAAGAGCCACGAGTTAGGCGAGTTTCAATGTTCCAAGTGCGACATGGTGTTTCCGAGTCGACCTGCTAAAAATAGGCACGTGGCAGCGGCGCATGCGCGAAAAGAGAAGTATAGATGCCCTCTGTGCGATGAGTATTTCGACTCGTACCATTCGAGATTGCGACATTTGGACAAGATTCACGGACAGAAAACAGAGTACAAATGCAGCTTGTGTCCAGCAGTGTTCGGAACAGCCACCTTAAGATATTCCCACATAAAAGTTGTTCacatgaagaagaagaagaattcaTAG
Protein Sequence: MMMVSSANDAELGIKRGRKLKEVVTARQMRRRRRANNELPEESEKRIAKTMMRRNAMTILECSTAWAFRWFHGAFYCSYCETKYVDIHPLREHVRLNHLNQAPTKNIFAKLTENNMLKIDVADLSCKLCNRVVNGLTSLKEHLSAHNRPLYTDYSDGVLPFKLDDDGFYCQICYIHFLNFARVNEHMNSHYQNYICDMCGKAFVSKSRFRKHVQSHEKGNFPCGSCSEVLETRAARMFHRLRVHRKGVRYTCPRCPEMFTSYHVRVRHLVDVHGQQKIEYGCEVCGKTFETSSKRAGHYRLNEDSKNSEDSPIRIVWKRKRGVLIEDKANAAIILKNSNAVVFRWQRGKFMCAYCPQMCTNVAAVRSHSTIHSNKLDVFEKPEVRNSFPLRVDITDLSCDLCTKRVQSIDGLKIHLAQAHSQKTNPKYTDGVIPFVLTEREFKCVHCGTQYEGFMKLFIHMNNHYQSFICHICGKGYSAKHKLSAHRKSHELGEFQCSKCDMVFPSRPAKNRHVAAAHARKEKYRCPLCDEYFDSYHSRLRHLDKIHGQKTEYKCSLCPAVFGTATLRYSHIKVVHMKKKKNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01359296;
90% Identity: iTF_00819533;
80% Identity: -