Delp025913.1
Basic Information
- Insect
- Deilephila elpenor
- Gene Symbol
- -
- Assembly
- GCA_949752805.1
- Location
- OX457122.1:2288165-2296654[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.71 58 5.1 0.1 2 19 220 237 219 239 0.94 2 11 1.2 1e+02 4.4 0.2 2 23 249 269 248 269 0.91 3 11 0.94 77 4.7 1.3 1 23 273 296 273 296 0.90 4 11 7.6e-05 0.0063 17.6 2.8 1 23 335 358 335 358 0.98 5 11 3.6e-06 0.0003 21.7 0.7 1 23 362 384 362 384 0.97 6 11 0.29 24 6.3 0.4 2 23 392 412 392 412 0.93 7 11 0.044 3.7 8.9 0.2 2 21 419 438 418 443 0.91 8 11 1.3e-05 0.0011 20.0 0.8 1 23 451 474 451 474 0.96 9 11 0.001 0.085 14.0 3.9 1 23 480 503 480 504 0.97 10 11 8.3e-05 0.0069 17.5 0.9 2 23 514 535 513 535 0.94 11 11 6.2e-05 0.0051 17.9 0.6 2 23 542 564 541 564 0.96
Sequence Information
- Coding Sequence
- atGGAGGACTGTCCCGAGGACCTGTTGAAGAAACTGTGTTGTACCTGTTTGAGTGATAATCGCAAGTTGTACTTACTTTGCCGGGTCGACGATGGTGTCAACAATTTGTATTTGTTGCTGTCGTCGGACACTGAAGCTTACAGGGAAGGGTTTTACAAAGACACAGCTAGTCTGTTCATATGCTGGGAGTGTAAGGCTATTATGAGAAGGATCAGCCGGTTCAGGAGACAGGCTTGTGTTGCCCAGAAGAAGTTGACAGCCATAGCTGAGGGCAGAACAGATGCGAAATTCCAAACACAATGTCTCTCTTCTCTCCATTCTGAACATATCACAACTTATCAAGTTGTGGAGGAGACCAAGGAAGACAACTTTGTGGACTGCGGGCTGGCGAAAGAGCTGAGGAATGAGATAGATATTGATGATGTACCACTGTCAGAGCTGCAGAATTATGACGATACTTATAGAGACGATGATGAAGCACAACCAAACAGCATAAAGGACCACACAAAAgatataaaacagaaaaatataaaagtaagaaaagtaaaaaagaaactaaaagATAAGTGCTTCACTGTCAAAAAGATGACAGAGGAAGAATTAATAGATTATAGAAAGAAACGGTTGTCTATGGCTTCATTCGTTAATTCTAAAGACAAGTGTGAACAATGTTTAGAAGCATTTAATGATGTTAAGGAATTTGAGACTCATAATGAATGCCATGAAGAGaagcCGGGTCACATACAATGTCATATCTGCAGTATATATGTTCCTGCCTCATCGTTTGAGAGCCATATAAGTTCTCATTACCAGAAATATAGTTGTCAACTCTGTGATTTTATAACACATCAAAGATCTGAAATGTTGGTGCATTTTGTAAGCAGTCATTCGAAGAAAAGTAATATTTGGAGTAAgGGTCAGAGAATAGCTTCGCAAGTAAAGAACCCAGGAGCGAAACCTTGTAGAACAAGAATTATGACAGACAAGAGGACACCTGCAGGCTTCAAGTGTCCGGAATGTGACAAATATTTTGACAACAAGAACTTGCGGTACAAGCACATTCGGCGGTACCACAGCGAAGGATTTTCGTGCAGCGTGTGCGGGAAGCGATATCCGTTTAAAGATAACCTTATCAAGCATGAAAGACTGCACCAAGGCCCGCTACCACGCGAGGAATGCCCCATATGCCACAAGATGATCCGCGTAGACCTAGTGAAGACACACGCGCGCATCCACTCCACGCGGCAGACCATCACTTGTGTGGCATGCGACAAGCGGTACATCAGCCGCGCCTCCTACGAGAACCACCTCAAGTACAGCCAGGCGCACGCCTCGCAGGACGTGCTCAAGTACAAATGCTCGATGTGCGACAAGGGCTACAGGTCTAAGGGTGAACTTCGGGACCACGTCAACTACCAACACCTCGGGAAGACGCACCACAAGTGCCCCGTGTGTGGGAAGGCGTTGGCGACACGTCGTTGCATCACGCGGCACGTGCGGCGCGCGCACCACCACATCCAGGAGAGCGCCAGGGACAAGGTCTGCCAGCAGTGCGGACGCACCTTCAGGGATAAGAAAGGGCTGCGAGAACACGAGTTCATACACACTGGAGAGCGCCCTCTGTCGTGCGAGATCTGCGGCTCCACGTTCAGACAGAGCGCGTCTCTTTACACCCACAGGAAGCGCGTCCACAAAATATACCCGCAGAAGAAAAACGTCGAGTTGGTCGAAGTTGaatag
- Protein Sequence
- MEDCPEDLLKKLCCTCLSDNRKLYLLCRVDDGVNNLYLLLSSDTEAYREGFYKDTASLFICWECKAIMRRISRFRRQACVAQKKLTAIAEGRTDAKFQTQCLSSLHSEHITTYQVVEETKEDNFVDCGLAKELRNEIDIDDVPLSELQNYDDTYRDDDEAQPNSIKDHTKDIKQKNIKVRKVKKKLKDKCFTVKKMTEEELIDYRKKRLSMASFVNSKDKCEQCLEAFNDVKEFETHNECHEEKPGHIQCHICSIYVPASSFESHISSHYQKYSCQLCDFITHQRSEMLVHFVSSHSKKSNIWSKGQRIASQVKNPGAKPCRTRIMTDKRTPAGFKCPECDKYFDNKNLRYKHIRRYHSEGFSCSVCGKRYPFKDNLIKHERLHQGPLPREECPICHKMIRVDLVKTHARIHSTRQTITCVACDKRYISRASYENHLKYSQAHASQDVLKYKCSMCDKGYRSKGELRDHVNYQHLGKTHHKCPVCGKALATRRCITRHVRRAHHHIQESARDKVCQQCGRTFRDKKGLREHEFIHTGERPLSCEICGSTFRQSASLYTHRKRVHKIYPQKKNVELVEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820414;
- 90% Identity
- iTF_01430217;
- 80% Identity
- -