Delp001778.1
Basic Information
- Insect
- Deilephila elpenor
- Gene Symbol
- -
- Assembly
- GCA_949752805.1
- Location
- OX457094.1:3268816-3278078[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 97 4.4 0.1 2 23 189 211 188 211 0.89 2 15 0.076 6.3 8.1 1.3 1 23 231 254 231 254 0.95 3 15 3.6e-06 0.0003 21.8 5.5 1 23 261 284 261 284 0.98 4 15 0.21 17 6.8 5.0 3 23 292 312 290 312 0.96 5 15 2.6e-06 0.00021 22.2 1.8 1 23 318 340 318 340 0.98 6 15 0.15 12 7.2 0.7 1 23 629 651 629 651 0.98 7 15 2.9 2.4e+02 3.1 0.9 3 23 679 700 677 700 0.92 8 15 3.6e-05 0.0029 18.6 0.3 1 23 723 745 723 745 0.98 9 15 0.032 2.6 9.3 0.4 3 23 751 772 750 772 0.96 10 15 0.0049 0.41 11.9 1.5 1 20 777 796 777 800 0.90 11 15 0.021 1.7 9.9 0.7 2 23 807 829 806 829 0.90 12 15 5.8e-05 0.0048 17.9 4.4 1 23 836 859 836 859 0.98 13 15 3.3e-05 0.0027 18.7 1.9 2 23 866 887 865 887 0.97 14 15 5.6e-07 4.6e-05 24.3 1.4 1 23 893 915 893 915 0.99 15 15 3.7e-05 0.0031 18.6 3.2 1 23 921 943 921 944 0.95
Sequence Information
- Coding Sequence
- atgaGAACCAATTATGGTGAATGTCGTTGCTGTCTTGCAAAAGGAAATCATCAGAGTATAACAAAAGAGTATTATTACAATGGAATACGAGAAGTATTTTTGGACGTTTTTATGGAGTGTTTCAATTTATGTTTGTCCACAAACTCTGAATTGAGCAGTTTGATCTGTGCAACATGTGTGTCTCGCCTGCGCAATGCGAGTGATTTCCGGATGATGGTGGCAAGCACAGAGACACAGCTGCTCAATGCACTCTCACATCCACACAATAACCACACTATATTTATCAATGTACAGAATGTGGATGAAACAGCCAATTATGAGAACAATGTAAAAGTTGAAACTGTGAAAGAGGAACCTTCAGAAATAGATGAGCTGCAAAATGAAGATTTGGATTATATGATTGAAGATTGcgATGCGGATGCATGCACAGTGGAGGGTGAAGAGGAGTTGCTAGCTCGGTTCCCGCATCACATACTCAAGCGGCTGCCCACAAGGCGACAGTTGCGCAAAATCTGCCCCGAATATGCCAACCACTTGAAACTGCTTCACGATGTCACTGATTTAAAATGTTCTATATGCGATGAAGCAATGTCGGGCGTGAATATGTTGAAAACACATCTCACGGAGGTACATAAAAAAGAATTACACGGCGAGTGCACGGATAGAGTTATACCATTCAAgCTAAAGCGTTACAAGTGCCTGCAATGTGCCGAGCGGTTCACGCAGTACTTGTACCGTCAGAAACACATGCTGGAAGTGCACGGCATCGCACCCATTCTGTTCAAATGCAAGGACTGCCACAAGTCGTTCAACAGACGCTACGCGCTCGCCAGACACACCAAGCGAAACCACTTGGAAGAGAAGGACCAGCACTGCACCATCTGCTCATACAAGTGCTTTTCTCTTAATGAACTCAAACTGCACATGATTAAACACACCGGTGAAAAAAAGTTTGTGTgtacaatttgtaaaaaatctttgtcGAGGAAGAAGTCATTGAAGGAACACATGAAGATCCATAATAATGAGCGGAGTAAAATGGAATTACATAATACAATAGTAACTGATTATGGCGAGTGTCGATGTTGCCTCGCGAAGGGCAACCATCGGGACATAACCAAGGAATACTATTTCAATGGAATACGAGAAgtttttgttgatatttttgtggAATGTTTTAGTTTATATTTATCAACAAATGAGAAGTTAAGCACTCTGATTTGCTCGGCGTGCGTGTCTCGGCTGCGCGACGCAAGCAGCTTCAGGATGATGGTGTTGAGCACCGAGAGGCAGCTGCTTGATTCTCTTACATACCATGATCATAATTACACTGTCTTTGTTAatgGGTCAGAAGTGAGTAGCACAGATGTGAAGATAGAACAGCAAGGTGATGTGAAGTCAGAGGATGAAGATGTTGATACCAATTACGAATTTCATTTGGACACTGGCAGTGGACCAGTACATGATTGTGTTAAAACAATATGTAAAGTGCATAAAAAGTACATAAAGCAACACCAAAGTGGATGTAAATGGATTGGTTTGGTGCTGTGGCCAGCAGAGCAGGATGAGAGTGTGGCGGAGTCGGGGGAGGCGGAGGAGTTGTCCCAGGTGGTACGGCGCTTGGCGGCGGGCACCGTAAAGCCGCTGCCCACGCGCGCCACGCTGCGCGGACACTGCCCGCTCTACGTCAAGCATCTAGAAGCTCTGCGAGgaAAGCACATCACGGCCAAGTCTATAGAAAAGCTCATTAGAGGCTCAGGAAAACAGTCTAAATCACATAAAAGTAAATTGTTTATCTCGGAAAAAATGGCGAACACTATCAATGCTTGCACTATATTCGAATTTTCAAACGCAACAGCTTTCAAAACCAAGATGAAAGGCGGCTACCCATGTTTCTATTGCAGAGATATATTTGACACTATGGATGTATTGCGAGAACACCAGAAGAAACATCCCAAGTCGTTGCTGTTCAAACTACTGAGCAAATATACCGCGGATGCCTTGGTTGTGTATGCAGACATAACAGATCTCGCTTGCAGTATTTGTTGTAAAAAGATCTCAAGTATGAATGAACTAAAAAGTCACTTAATAAATGTGCACGAGAAAAGAATGTATACGGATTTTGAAGATAGAGTCATACCTTTTAAGTTGTCGGGTCACAGCGACTTTGAGTGTCAGATATGTGGGTTTTCTTTCGAAACTTTCGGTTCTATAGAGAGGCATATGAATGTTCATTACAGGAATAGAATCTGCGAACAATGCGGCGCGGGATTTGTCACAATGCACCGACTGAAAATCCACTACTACACCGTTCACAAAGAAGGCTCGTATCCGTGCAATATATGCAAGAAAGTCTACTCGACTTATAACAAATACAGaatacattttgattttatacataaaatgatCAAAAAGAACAAATGTCCTAAGTGTCCGGAGCGGTTCGTCGACTACTTCACCAGGCAGCGACATCTCGTGGAGAAACACGGAGAAACACCCATCCTGTACCGATGCAAAGTGTGCGACAGAGCGTTCAGCAGACGATTCACGCTCTCCGGTCACATGAAACGATGCCACTTAGAAGAAAAGGAGATTCAATGCTCGTACTGCCCCTACATGTGCTATACAAAGTCAGAGCTTCGCGTCCACATGCTGAAGCATGGCGCAGAGAAGTGTTACGAATGTACTGTTTGTAAGAAGTCATATGCGCGCCAGAAGACGTTGAAGGAACACATGAGGATACACGAAAACGACAGAAGGTTCGCGTGTGCCGTGTGCGGACAAACCTTTGTGCAAAAGTGTAGTTTGAAAGGACATATGAAGACACATCATGCGGAGTACGAAACCAATATGCAGCAGTGA
- Protein Sequence
- MRTNYGECRCCLAKGNHQSITKEYYYNGIREVFLDVFMECFNLCLSTNSELSSLICATCVSRLRNASDFRMMVASTETQLLNALSHPHNNHTIFINVQNVDETANYENNVKVETVKEEPSEIDELQNEDLDYMIEDCDADACTVEGEEELLARFPHHILKRLPTRRQLRKICPEYANHLKLLHDVTDLKCSICDEAMSGVNMLKTHLTEVHKKELHGECTDRVIPFKLKRYKCLQCAERFTQYLYRQKHMLEVHGIAPILFKCKDCHKSFNRRYALARHTKRNHLEEKDQHCTICSYKCFSLNELKLHMIKHTGEKKFVCTICKKSLSRKKSLKEHMKIHNNERSKMELHNTIVTDYGECRCCLAKGNHRDITKEYYFNGIREVFVDIFVECFSLYLSTNEKLSTLICSACVSRLRDASSFRMMVLSTERQLLDSLTYHDHNYTVFVNGSEVSSTDVKIEQQGDVKSEDEDVDTNYEFHLDTGSGPVHDCVKTICKVHKKYIKQHQSGCKWIGLVLWPAEQDESVAESGEAEELSQVVRRLAAGTVKPLPTRATLRGHCPLYVKHLEALRGKHITAKSIEKLIRGSGKQSKSHKSKLFISEKMANTINACTIFEFSNATAFKTKMKGGYPCFYCRDIFDTMDVLREHQKKHPKSLLFKLLSKYTADALVVYADITDLACSICCKKISSMNELKSHLINVHEKRMYTDFEDRVIPFKLSGHSDFECQICGFSFETFGSIERHMNVHYRNRICEQCGAGFVTMHRLKIHYYTVHKEGSYPCNICKKVYSTYNKYRIHFDFIHKMIKKNKCPKCPERFVDYFTRQRHLVEKHGETPILYRCKVCDRAFSRRFTLSGHMKRCHLEEKEIQCSYCPYMCYTKSELRVHMLKHGAEKCYECTVCKKSYARQKTLKEHMRIHENDRRFACAVCGQTFVQKCSLKGHMKTHHAEYETNMQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -