Delp025802.1
Basic Information
- Insect
- Deilephila elpenor
- Gene Symbol
- -
- Assembly
- GCA_949752805.1
- Location
- OX457122.1:633260-652741[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00055 0.045 14.9 0.3 1 23 34 57 34 57 0.95 2 22 0.00014 0.012 16.7 1.6 2 23 65 86 64 86 0.97 3 22 0.081 6.7 8.1 1.4 1 23 90 112 90 112 0.98 4 22 0.00068 0.056 14.6 1.2 1 23 117 140 117 140 0.97 5 22 0.089 7.3 7.9 0.1 3 23 147 168 147 168 0.95 6 22 0.018 1.4 10.1 0.3 2 20 178 196 177 198 0.93 7 22 0.021 1.8 9.9 2.4 3 23 208 229 207 229 0.96 8 22 0.0096 0.79 11.0 0.5 1 23 238 261 238 261 0.97 9 22 0.00015 0.012 16.7 1.1 2 23 272 293 271 293 0.97 10 22 1.7e-06 0.00014 22.8 0.8 1 23 299 321 299 321 0.99 11 22 0.00028 0.023 15.8 0.1 1 23 327 349 327 349 0.96 12 22 0.00011 0.0092 17.1 2.2 1 23 739 762 739 762 0.97 13 22 0.0019 0.16 13.2 1.5 3 23 771 791 770 791 0.98 14 22 0.12 9.9 7.5 2.3 1 23 795 817 795 817 0.97 15 22 0.00038 0.031 15.4 3.8 1 23 822 844 822 845 0.94 16 22 0.057 4.7 8.5 0.1 3 23 852 873 852 873 0.97 17 22 4 3.3e+02 2.7 3.4 6 19 886 899 881 901 0.90 18 22 0.038 3.1 9.1 1.2 1 23 908 931 908 931 0.93 19 22 0.00083 0.068 14.3 1.3 1 23 939 962 939 962 0.97 20 22 0.00051 0.042 15.0 0.1 2 23 974 995 973 995 0.97 21 22 5.5e-05 0.0045 18.0 1.9 1 23 1001 1023 1001 1023 0.98 22 22 0.00013 0.011 16.8 0.2 1 20 1029 1048 1029 1050 0.94
Sequence Information
- Coding Sequence
- ATGGCTAATTTCGAAAGGATTTTTGATGTGGATATAACGGTGTTGAACAAAGAACAGCAAATTCGGGATATTAAAGAGAAGGATGCCTTTAACTATCCTTATAGGTGTGGAGATTGCTATAAAGGATTCATGAATGAAGGCAATTTGGTGAAACATAACAGAGCTCTGCACGATATGAGTCGCGGTAATTCGGTTTGTGACGTATGCAAGTCTCGATACAAGGATAAGCGAGACCTCAACAGACACATGAAGTCGCACAGATTGAAGTTTACATGTAGACAATGTAACTACGTATCTAAAAATACgTCCAATGCTGCCGAACATTTCAAGATGCACACAGGACAATGTTACAAATGTGAAAGCTGCGCCAAATCTTACGAgaAGCAATCAACGTATTTAACACACATGCGCCTCATCCACCCGTCTCAGCTGATCTGGTGTGAACTGTGTGGGGAATCCTTTGTGTCCGACTTCGGCCTGAATGGACACAAGAAACTGGCTCATAAAGAGctaAAATTCCCTCCAGACACAAAATGTTCAAAATGTAAAACTCAATTTATGAACTACGAGGCTCTAAGGCGACATGCAGAAGTCGCGAGTGGATGCGAATCGCGCGCGAATTGCGTACATTGTGGAGACAGCTTTACCACTCGATTGATGCTGAAAAATCATCTGTTGAAGACGCATCGAGAGAGGACTAGTAAGGGCGACTACCCCTGTGTTAAGTGCAATAAATGGTTCCCCCAGCAGAACTTGTACAGCGCACACTATCGGCGGGTGCATGCTGAACCTAGTGTATTGAGAAAGAATGTTATGTGTGAACTGTGCGGGAAGGCACTGGCGaaTAAATGTGAGTTGCGATATCATCAGAGAACTCATACTGGAGAACGGCCATTCAAATGCCCTCAGTGTCCGAAAGGTTTCATCAAAGCTGCACATATGAggAATCACATGCGTGTTCACTCCACGGACCGTCCGTTCGCTTGCAAGTTGTGCCCGAAGACTTTCAAAGGTCCAGCGGCTTTGAACGGACATCAATATgTACACACTGGAATGAAACCCCCGATGCGACGGAAAAAGAGGCCCCTTTTCGTAACAGACACAGTAGAACAATTTGTCGCTCTTTTTAGTTTAAAACGgtttaaaaatatggaaaatgaaataaaatgtgaattatTGTGCCGTGCTTGTTTATCCACCGGCCGGCTTTACAGCATCTATGATTACAAGCTTTCGGAGTCATACAGGGAGCTTACAGGATCTGAGGTGAATCCTCAAGATGGACTTCCTCAGCACCTCTGCACTATATGCAGTACATTGCTGGCCAAACATGCAGCCTTCAAGAAGGCATGTCTCAGATCTCTAGCTTTACTAGAAGATGTCAAGAACAAACAGGATAATATAACAGTCAAATGTATCACAGAAGAGTTAAAACTATCTCCGAAACGGTACAGCCTATCATCTACTCTTATAACCCAGTACCCACCAACCAATTTCGATGCAGACATCACTATAGGTAATAGAGATGGCCCGTTTCAATACCATAGTGACATCAAACCAATTAAATCCGAAGTAGAAATGTATATGGAGAATTGCTCTATGAAAATTGATGAGAATTCCACCGATAGCTGTAGCAGTCAACTTTATATTGATGAAGTTATGGTCaatgaagataataatttaGAAGATGCAGATACTCCTAAAATTGATGAAGTTAAAAGCGATAGTGTTTATGTTGCTATTACCGATGATAAAGAAGAAAAACCGAGGAATAGTAAGAATTTCTACAAAGAATTAGAAGAGGACGAAGTTGTCGAAAAGAAGGACAAGAAAAGTAGAAAGGTTTCGAAAAAACGCGACGTTACTGACAAAAAAGAGAAAgccaaaaaacataaaactaaaaaaccCAAAAATGATGAAGAAACGCCAACTAAGAAAGTTAAAAAGACGAAAATTGAAGCTACAGAAGATGATAAAATGAAGAACAACGAAATTGACCTCGAGAGTGATGAGAAACCTGAAACTGAAGTCAAAAAGGAGAAATTCAATAAATCGTcgaaaattaacaaataccgcGGGAAGTTTTTTGAAACTACTGAAAATATGAGTGGATTCGAGTCTTTATATGAAGTAGAAGTTATTATTTTGACTAAGGAGCAACAACATAGCGATGTTTTGGAAAGGAAGACAAGTCATAATTATTTGAACAGTCCTTTCCGATGCCAGTTTTGTTTCAAAGGGTTTATTGATGAAGATAATTTGAATAAGCATTATAAATCGCAGCATGACCCGAGTCGCGGCACAGTGGCGTGCGAGTTCTGTCAGTTCCGGTACAGAGACAAGCGCGGCTTAAACCAACACCTTAAGACTCATCGACTCAAGTTCATCTGTCGCCAGTGCAAATACGTGTCTAGGACTACGTACAACGCGAAGGAGCATTACAAGATGCACCGTGGTATGATGCATGATTGTAAGCAATGCGGGAAGGCTTACGAgaaGCTGTCTACCTACTTGACACACATGCGCGTCCACCACCCCGACGAGCTGGCGTGGTGTGATCTCTGTGGGGAACCTTTTGTGGGACAGTTTGGACTCAACGGACACAAGAAGAAGGCTCACAGAGACTTAAAATTCCCCCCCGACTGCAAGTGCCCCTGCGGCGTCCACTTCACGAACCAGGATGCTCTCCATCATCACAGCTCCTTGGGGTGCAGTTGCACTCACCCGTGCGTGCACTGCGGCGCGGGGTTCGACAGCGGGGTGCAGTTGAAGCAACATCTGCACCTGGAACACAGGGAGTTACGGGAGAAGCAATATGACTGCGCTAAGTGCAGCAAAACGTTTAAGAGCGAGTCGTTATATTCAGGACATTACAGAAGGGCTCATGCTGATTTCAAACGAACTAATTTATCTCCCTGGGTCTGTGAGATGTGCGGGAAGATTTTACCGAATAAATCCAGATTGGTTTACCATCAGAGAGTACACACTGGAGAGAGACCATATAAGTGTATGCAGTGTCCCAAGAGTTTCACCATGTCTAAACTATTAAggTCTCATTCCCGAGTGCATTCGAACGAGAGGCCGTTTACTTGCAAGCTATGCCCTAAAGCCTTCAAAGGTCCGTCAGCACTGAGAGCTCATGAATGTGTAAGTAGAATTACTTATGTAAAGACATGA
- Protein Sequence
- MANFERIFDVDITVLNKEQQIRDIKEKDAFNYPYRCGDCYKGFMNEGNLVKHNRALHDMSRGNSVCDVCKSRYKDKRDLNRHMKSHRLKFTCRQCNYVSKNTSNAAEHFKMHTGQCYKCESCAKSYEKQSTYLTHMRLIHPSQLIWCELCGESFVSDFGLNGHKKLAHKELKFPPDTKCSKCKTQFMNYEALRRHAEVASGCESRANCVHCGDSFTTRLMLKNHLLKTHRERTSKGDYPCVKCNKWFPQQNLYSAHYRRVHAEPSVLRKNVMCELCGKALANKCELRYHQRTHTGERPFKCPQCPKGFIKAAHMRNHMRVHSTDRPFACKLCPKTFKGPAALNGHQYVHTGMKPPMRRKKRPLFVTDTVEQFVALFSLKRFKNMENEIKCELLCRACLSTGRLYSIYDYKLSESYRELTGSEVNPQDGLPQHLCTICSTLLAKHAAFKKACLRSLALLEDVKNKQDNITVKCITEELKLSPKRYSLSSTLITQYPPTNFDADITIGNRDGPFQYHSDIKPIKSEVEMYMENCSMKIDENSTDSCSSQLYIDEVMVNEDNNLEDADTPKIDEVKSDSVYVAITDDKEEKPRNSKNFYKELEEDEVVEKKDKKSRKVSKKRDVTDKKEKAKKHKTKKPKNDEETPTKKVKKTKIEATEDDKMKNNEIDLESDEKPETEVKKEKFNKSSKINKYRGKFFETTENMSGFESLYEVEVIILTKEQQHSDVLERKTSHNYLNSPFRCQFCFKGFIDEDNLNKHYKSQHDPSRGTVACEFCQFRYRDKRGLNQHLKTHRLKFICRQCKYVSRTTYNAKEHYKMHRGMMHDCKQCGKAYEKLSTYLTHMRVHHPDELAWCDLCGEPFVGQFGLNGHKKKAHRDLKFPPDCKCPCGVHFTNQDALHHHSSLGCSCTHPCVHCGAGFDSGVQLKQHLHLEHRELREKQYDCAKCSKTFKSESLYSGHYRRAHADFKRTNLSPWVCEMCGKILPNKSRLVYHQRVHTGERPYKCMQCPKSFTMSKLLRSHSRVHSNERPFTCKLCPKAFKGPSALRAHECVSRITYVKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -