Delp021256.1
Basic Information
- Insect
- Deilephila elpenor
- Gene Symbol
- -
- Assembly
- GCA_949752805.1
- Location
- OX457114.1:2137728-2138198[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-13 4.5e-10 39.7 0.1 1 39 15 53 15 58 0.92 2 2 9.2 5.6e+03 -2.2 0.0 16 23 131 138 128 138 0.80
Sequence Information
- Coding Sequence
- ATGGAGCCTTCCAATTCTACTAAAAAAAAGCGCGGGGAATGGACAGAAACACAGTTGAAATCCGCCCTCCAAGTAGTAAAAAGCGGCCAAATGTCACAGCGGAAAGCTGCTGAAACATATGGCATACCCAGGCGCATATTAAGAAACCACATTGAATCTGGTTCCACGGAGAAGATAACTGGTCGTGTGCCTATTCTTAATAAAGCCGAAGAAAAGGATTTATGCAAAAGAATAATTAGACTGTCACAAATAGGAATGCCATTAACACCCAAAATCGTTCGGAAGCAGGCTTACGAATTTTGCAAAgctaataatatacaaaattcttttagtgaagtaaaaaatattgctgGGAAAAAATGGCTCAGAAATTTTATAAACCGTAATCCTGAAATATCGGTTCGAAGAGCTCAGTTGTTAAATCCCGCCAGGGCTCAAAAACTTAATAAGCCTTATAActtaataacttaa
- Protein Sequence
- MEPSNSTKKKRGEWTETQLKSALQVVKSGQMSQRKAAETYGIPRRILRNHIESGSTEKITGRVPILNKAEEKDLCKRIIRLSQIGMPLTPKIVRKQAYEFCKANNIQNSFSEVKNIAGKKWLRNFINRNPEISVRRAQLLNPARAQKLNKPYNLIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00419698; iTF_01091622; iTF_00932333; iTF_00157136;
- 90% Identity
- iTF_00419698;
- 80% Identity
- -